Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.72■□□□□ 0.43
SHMT2P34897 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.72■□□□□ 0.43
SHMT2P34897 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.72■□□□□ 0.43
SHMT2P34897 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.72■□□□□ 0.43
SHMT2P34897 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.72■□□□□ 0.43
SHMT2P34897 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.72■□□□□ 0.43
SHMT2P34897 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.72■□□□□ 0.43
SHMT2P34897 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.72■□□□□ 0.43
SHMT2P34897 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
SHMT2P34897 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.72■□□□□ 0.43
SHMT2P34897 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHMT2P34897 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.71■□□□□ 0.43
SHMT2P34897 AC139713.2-201ENST00000641328 2723 ntBASIC17.71■□□□□ 0.43
SHMT2P34897 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
SHMT2P34897 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.71■□□□□ 0.43
SHMT2P34897 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.71■□□□□ 0.43
SHMT2P34897 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.71■□□□□ 0.43
SHMT2P34897 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SHMT2P34897 AP003733.1-201ENST00000491725 852 ntBASIC17.71■□□□□ 0.43
SHMT2P34897 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
SHMT2P34897 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.71■□□□□ 0.43
SHMT2P34897 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.71■□□□□ 0.43
SHMT2P34897 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SHMT2P34897 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.71■□□□□ 0.43
SHMT2P34897 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SHMT2P34897 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHMT2P34897 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.71■□□□□ 0.43
SHMT2P34897 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.42
SHMT2P34897 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.71■□□□□ 0.42
SHMT2P34897 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.71■□□□□ 0.42
SHMT2P34897 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
SHMT2P34897 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
SHMT2P34897 AC012313.1-201ENST00000593393 3059 ntBASIC17.7■□□□□ 0.42
SHMT2P34897 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.7■□□□□ 0.42
SHMT2P34897 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHMT2P34897 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHMT2P34897 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHMT2P34897 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHMT2P34897 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SHMT2P34897 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.7■□□□□ 0.42
SHMT2P34897 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.7■□□□□ 0.42
SHMT2P34897 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.7■□□□□ 0.42
SHMT2P34897 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.7■□□□□ 0.42
SHMT2P34897 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHMT2P34897 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.7■□□□□ 0.42
SHMT2P34897 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHMT2P34897 ABALON-201ENST00000629058 1903 ntBASIC17.7■□□□□ 0.42
SHMT2P34897 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.7■□□□□ 0.42
SHMT2P34897 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.7■□□□□ 0.42
SHMT2P34897 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHMT2P34897 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SHMT2P34897 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHMT2P34897 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.69■□□□□ 0.42
SHMT2P34897 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHMT2P34897 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.69■□□□□ 0.42
SHMT2P34897 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms