Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.34■□□□□ 0.85
CIITAP33076 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CIITAP33076 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.34■□□□□ 0.85
CIITAP33076 AC074051.2-201ENST00000565115 352 ntBASIC20.34■□□□□ 0.85
CIITAP33076 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.34■□□□□ 0.85
CIITAP33076 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.33■□□□□ 0.85
CIITAP33076 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 FLJ13224-201ENST00000313737 1514 ntBASIC20.33■□□□□ 0.85
CIITAP33076 NSUN5P1-202ENST00000421140 1535 ntBASIC20.33■□□□□ 0.85
CIITAP33076 NSUN5P2-203ENST00000457352 1529 ntBASIC20.33■□□□□ 0.85
CIITAP33076 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.33■□□□□ 0.85
CIITAP33076 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CIITAP33076 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
CIITAP33076 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.33■□□□□ 0.85
CIITAP33076 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CIITAP33076 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CIITAP33076 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CIITAP33076 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CIITAP33076 AC104819.1-201ENST00000504587 486 ntBASIC20.33■□□□□ 0.85
CIITAP33076 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.33■□□□□ 0.85
CIITAP33076 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.33■□□□□ 0.85
CIITAP33076 AL138831.2-201ENST00000606564 490 ntBASIC20.33■□□□□ 0.85
CIITAP33076 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.33■□□□□ 0.85
CIITAP33076 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.33■□□□□ 0.85
CIITAP33076 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CIITAP33076 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.33■□□□□ 0.84
CIITAP33076 AC125634.1-201ENST00000438758 1403 ntBASIC20.33■□□□□ 0.84
CIITAP33076 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CIITAP33076 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CIITAP33076 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.33■□□□□ 0.84
CIITAP33076 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CIITAP33076 KRT8P47-201ENST00000604727 1398 ntBASIC20.33■□□□□ 0.84
CIITAP33076 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CIITAP33076 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CIITAP33076 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
CIITAP33076 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.32■□□□□ 0.84
CIITAP33076 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.32■□□□□ 0.84
CIITAP33076 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CIITAP33076 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.32■□□□□ 0.84
CIITAP33076 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CIITAP33076 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CIITAP33076 DUSP5P1-201ENST00000441325 1139 ntBASIC20.32■□□□□ 0.84
CIITAP33076 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.32■□□□□ 0.84
CIITAP33076 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.32■□□□□ 0.84
CIITAP33076 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.32■□□□□ 0.84
CIITAP33076 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.32■□□□□ 0.84
CIITAP33076 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CIITAP33076 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CIITAP33076 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.32■□□□□ 0.84
CIITAP33076 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CIITAP33076 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CIITAP33076 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CIITAP33076 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.31■□□□□ 0.84
CIITAP33076 AC097374.2-201ENST00000618617 1306 ntBASIC20.31■□□□□ 0.84
CIITAP33076 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CIITAP33076 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.31■□□□□ 0.84
CIITAP33076 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms