Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.76■□□□□ 0.11
COL8A1P27658 AC011467.2-201ENST00000598425 242 ntBASIC15.76■□□□□ 0.11
COL8A1P27658 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL8A1P27658 AC093512.1-201ENST00000617969 520 ntBASIC15.76■□□□□ 0.11
COL8A1P27658 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL8A1P27658 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.76■□□□□ 0.11
COL8A1P27658 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL8A1P27658 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL8A1P27658 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL8A1P27658 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL8A1P27658 AFG3L1P-217ENST00000557444 2447 ntBASIC15.76■□□□□ 0.11
COL8A1P27658 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.76■□□□□ 0.11
COL8A1P27658 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
COL8A1P27658 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
COL8A1P27658 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL8A1P27658 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.76■□□□□ 0.11
COL8A1P27658 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.75■□□□□ 0.11
COL8A1P27658 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
COL8A1P27658 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 CEND1P1-201ENST00000451006 455 ntBASIC15.75■□□□□ 0.11
COL8A1P27658 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.75■□□□□ 0.11
COL8A1P27658 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 AC027612.4-201ENST00000605371 583 ntBASIC15.75■□□□□ 0.11
COL8A1P27658 AL139288.1-201ENST00000623748 933 ntBASIC15.75■□□□□ 0.11
COL8A1P27658 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 KRT8P32-201ENST00000512863 1461 ntBASIC15.75■□□□□ 0.11
COL8A1P27658 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
COL8A1P27658 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 ME2-218ENST00000640965 2476 ntTSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL8A1P27658 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL8A1P27658 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.75■□□□□ 0.11
COL8A1P27658 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.74■□□□□ 0.11
COL8A1P27658 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
COL8A1P27658 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
COL8A1P27658 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.74■□□□□ 0.11
COL8A1P27658 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
COL8A1P27658 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.74■□□□□ 0.11
COL8A1P27658 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.74■□□□□ 0.11
COL8A1P27658 AC005034.1-201ENST00000426657 489 ntBASIC15.74■□□□□ 0.11
COL8A1P27658 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 AC108751.1-201ENST00000490852 363 ntBASIC15.74■□□□□ 0.11
COL8A1P27658 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.74■□□□□ 0.11
COL8A1P27658 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.74■□□□□ 0.11
COL8A1P27658 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.74■□□□□ 0.11
COL8A1P27658 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.74■□□□□ 0.11
COL8A1P27658 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 AL138831.2-201ENST00000606564 490 ntBASIC15.74■□□□□ 0.11
COL8A1P27658 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.74■□□□□ 0.11
COL8A1P27658 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL8A1P27658 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.74■□□□□ 0.11
COL8A1P27658 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC15.74■□□□□ 0.11
COL8A1P27658 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.73■□□□□ 0.11
COL8A1P27658 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
COL8A1P27658 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.73■□□□□ 0.11
COL8A1P27658 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL8A1P27658 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms