Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.34■□□□□ 0.05
USF1P22415 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
USF1P22415 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
USF1P22415 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15.34■□□□□ 0.05
USF1P22415 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.34■□□□□ 0.05
USF1P22415 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 AL662844.1-201ENST00000546340 181 ntBASIC15.34■□□□□ 0.05
USF1P22415 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.34■□□□□ 0.05
USF1P22415 AL353801.3-201ENST00000609898 542 ntBASIC15.34■□□□□ 0.05
USF1P22415 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.34■□□□□ 0.05
USF1P22415 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
USF1P22415 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
USF1P22415 NEFHP1-201ENST00000412845 2629 ntBASIC15.34■□□□□ 0.05
USF1P22415 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
USF1P22415 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
USF1P22415 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC15.34■□□□□ 0.05
USF1P22415 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.34■□□□□ 0.05
USF1P22415 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
USF1P22415 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
USF1P22415 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
USF1P22415 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
USF1P22415 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.33■□□□□ 0.05
USF1P22415 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
USF1P22415 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.33■□□□□ 0.04
USF1P22415 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.33■□□□□ 0.04
USF1P22415 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.33■□□□□ 0.04
USF1P22415 AP000347.1-202ENST00000435868 847 ntBASIC15.33■□□□□ 0.04
USF1P22415 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
USF1P22415 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.33■□□□□ 0.04
USF1P22415 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.33■□□□□ 0.04
USF1P22415 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.33■□□□□ 0.04
USF1P22415 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.33■□□□□ 0.04
USF1P22415 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 AL121912.1-201ENST00000603683 238 ntBASIC15.33■□□□□ 0.04
USF1P22415 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.33■□□□□ 0.04
USF1P22415 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
USF1P22415 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.33■□□□□ 0.04
USF1P22415 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.33■□□□□ 0.04
USF1P22415 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.33■□□□□ 0.04
USF1P22415 KRT89P-201ENST00000620027 1478 ntBASIC15.33■□□□□ 0.04
USF1P22415 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.33■□□□□ 0.04
USF1P22415 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
USF1P22415 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
USF1P22415 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
USF1P22415 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
USF1P22415 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.32■□□□□ 0.04
USF1P22415 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
USF1P22415 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.32■□□□□ 0.04
USF1P22415 AP002469.2-201ENST00000531724 424 ntBASIC15.32■□□□□ 0.04
USF1P22415 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
USF1P22415 AC011840.4-201ENST00000578471 627 ntBASIC15.32■□□□□ 0.04
USF1P22415 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.32■□□□□ 0.04
USF1P22415 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.32■□□□□ 0.04
USF1P22415 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
USF1P22415 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USF1P22415 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.32■□□□□ 0.04
USF1P22415 AC068587.9-201ENST00000641814 219 ntBASIC15.32■□□□□ 0.04
USF1P22415 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms