Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH3P20585 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH3P20585 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 AP003733.1-201ENST00000491725 852 ntBASIC18.02■□□□□ 0.48
MSH3P20585 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 AL136038.3-201ENST00000561909 1096 ntBASIC18.02■□□□□ 0.48
MSH3P20585 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.02■□□□□ 0.48
MSH3P20585 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
MSH3P20585 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
MSH3P20585 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH3P20585 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH3P20585 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.02■□□□□ 0.47
MSH3P20585 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.02■□□□□ 0.47
MSH3P20585 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.02■□□□□ 0.47
MSH3P20585 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.01■□□□□ 0.47
MSH3P20585 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
MSH3P20585 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
MSH3P20585 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
MSH3P20585 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH3P20585 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 AL645929.1-201ENST00000420084 975 ntBASIC18.01■□□□□ 0.47
MSH3P20585 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 SPDYE13P-201ENST00000445314 798 ntBASIC18.01■□□□□ 0.47
MSH3P20585 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.01■□□□□ 0.47
MSH3P20585 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH3P20585 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.01■□□□□ 0.47
MSH3P20585 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
MSH3P20585 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
MSH3P20585 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.01■□□□□ 0.47
MSH3P20585 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
MSH3P20585 KRT89P-201ENST00000620027 1478 ntBASIC18.01■□□□□ 0.47
MSH3P20585 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
MSH3P20585 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH3P20585 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18■□□□□ 0.47
MSH3P20585 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 NOC2LP2-201ENST00000407594 1944 ntBASIC18■□□□□ 0.47
MSH3P20585 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18■□□□□ 0.47
MSH3P20585 AC018470.1-201ENST00000624790 3129 ntBASIC18■□□□□ 0.47
MSH3P20585 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18■□□□□ 0.47
MSH3P20585 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18■□□□□ 0.47
MSH3P20585 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18■□□□□ 0.47
MSH3P20585 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18■□□□□ 0.47
MSH3P20585 TK1-205ENST00000590862 642 ntTSL 3 BASIC18■□□□□ 0.47
MSH3P20585 DBP-204ENST00000599385 709 ntTSL 3 BASIC18■□□□□ 0.47
MSH3P20585 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 AC135776.1-201ENST00000319817 2481 ntBASIC18■□□□□ 0.47
MSH3P20585 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
MSH3P20585 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18■□□□□ 0.47
MSH3P20585 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18■□□□□ 0.47
MSH3P20585 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MSH3P20585 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSH3P20585 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.99■□□□□ 0.47
MSH3P20585 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSH3P20585 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms