Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 AC006970.2-201ENST00000450065 779 ntBASIC15.23■□□□□ 0.03
CD74P04233 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC15.23■□□□□ 0.03
CD74P04233 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CD74P04233 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.23■□□□□ 0.03
CD74P04233 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC15.23■□□□□ 0.03
CD74P04233 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.23■□□□□ 0.03
CD74P04233 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.23■□□□□ 0.03
CD74P04233 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CD74P04233 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CD74P04233 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CD74P04233 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CD74P04233 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
CD74P04233 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CD74P04233 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CD74P04233 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
CD74P04233 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CD74P04233 LINC00304-203ENST00000565008 1864 ntBASIC15.23■□□□□ 0.03
CD74P04233 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.22■□□□□ 0.03
CD74P04233 AC099343.3-201ENST00000605834 2503 ntBASIC15.22■□□□□ 0.03
CD74P04233 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.22■□□□□ 0.03
CD74P04233 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.22■□□□□ 0.03
CD74P04233 LINC01126-201ENST00000623515 1646 ntBASIC15.22■□□□□ 0.03
CD74P04233 AL391005.1-201ENST00000623953 2435 ntBASIC15.22■□□□□ 0.03
CD74P04233 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.22■□□□□ 0.03
CD74P04233 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CD74P04233 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CD74P04233 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CD74P04233 PFKL-212ENST00000628044 129 ntTSL 3 BASIC15.22■□□□□ 0.03
CD74P04233 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.22■□□□□ 0.03
CD74P04233 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CD74P04233 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.22■□□□□ 0.03
CD74P04233 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.22■□□□□ 0.03
CD74P04233 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CD74P04233 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
CD74P04233 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.22■□□□□ 0.03
CD74P04233 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CD74P04233 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.21■□□□□ 0.03
CD74P04233 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CD74P04233 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CD74P04233 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.21■□□□□ 0.03
CD74P04233 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CD74P04233 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.21■□□□□ 0.03
CD74P04233 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
CD74P04233 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC15.21■□□□□ 0.03
CD74P04233 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CD74P04233 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.21■□□□□ 0.03
CD74P04233 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC15.21■□□□□ 0.03
CD74P04233 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.21■□□□□ 0.03
CD74P04233 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.21■□□□□ 0.03
CD74P04233 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.21■□□□□ 0.03
CD74P04233 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.21■□□□□ 0.03
CD74P04233 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CD74P04233 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CD74P04233 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.21■□□□□ 0.03
CD74P04233 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.21■□□□□ 0.03
CD74P04233 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CD74P04233 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CD74P04233 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CD74P04233 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CD74P04233 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CD74P04233 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.2■□□□□ 0.02
CD74P04233 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 GPAT2P1-201ENST00000444924 1672 ntBASIC15.2■□□□□ 0.02
CD74P04233 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CD74P04233 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CD74P04233 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.2■□□□□ 0.02
CD74P04233 AC008040.2-201ENST00000461049 708 ntBASIC15.2■□□□□ 0.02
CD74P04233 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.2■□□□□ 0.02
CD74P04233 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.2■□□□□ 0.02
CD74P04233 AC098934.4-201ENST00000564127 592 ntBASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms