Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC11.22□□□□□ -0.61
APOBP04114 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
APOBP04114 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.22□□□□□ -0.61
APOBP04114 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC11.22□□□□□ -0.61
APOBP04114 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
APOBP04114 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
APOBP04114 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC11.22□□□□□ -0.61
APOBP04114 MED29-202ENST00000594368 1471 ntTSL 2 BASIC11.22□□□□□ -0.61
APOBP04114 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC11.22□□□□□ -0.61
APOBP04114 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
APOBP04114 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC11.22□□□□□ -0.61
APOBP04114 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
APOBP04114 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC11.22□□□□□ -0.61
APOBP04114 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC11.22□□□□□ -0.61
APOBP04114 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
APOBP04114 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
APOBP04114 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
APOBP04114 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
APOBP04114 MRPS18AP1-201ENST00000414458 589 ntBASIC11.21□□□□□ -0.61
APOBP04114 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
APOBP04114 SLC4A1APP2-201ENST00000424054 1259 ntBASIC11.21□□□□□ -0.61
APOBP04114 AC022145.2-201ENST00000598203 171 ntBASIC11.21□□□□□ -0.61
APOBP04114 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
APOBP04114 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC11.21□□□□□ -0.61
APOBP04114 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC11.21□□□□□ -0.61
APOBP04114 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC11.21□□□□□ -0.61
APOBP04114 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.61
APOBP04114 AC015922.1-201ENST00000421102 1152 ntBASIC11.21□□□□□ -0.61
APOBP04114 SIGLEC30P-201ENST00000455569 941 ntBASIC11.21□□□□□ -0.61
APOBP04114 AC093214.1-201ENST00000511688 1107 ntBASIC11.21□□□□□ -0.61
APOBP04114 VPS29-207ENST00000549970 818 ntTSL 3 BASIC11.21□□□□□ -0.61
APOBP04114 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC11.21□□□□□ -0.61
APOBP04114 AC019129.2-201ENST00000609837 1235 ntBASIC11.21□□□□□ -0.61
APOBP04114 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
APOBP04114 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
APOBP04114 PC-214ENST00000628663 1470 ntTSL 5 BASIC11.21□□□□□ -0.61
APOBP04114 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
APOBP04114 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.21□□□□□ -0.62
APOBP04114 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC11.21□□□□□ -0.62
APOBP04114 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
APOBP04114 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
APOBP04114 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
APOBP04114 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
APOBP04114 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC11.21□□□□□ -0.62
APOBP04114 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
APOBP04114 SRP19-202ENST00000445150 833 ntTSL 2 BASIC11.21□□□□□ -0.62
APOBP04114 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
APOBP04114 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC11.21□□□□□ -0.62
APOBP04114 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC11.21□□□□□ -0.62
APOBP04114 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC11.21□□□□□ -0.62
APOBP04114 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
APOBP04114 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC11.21□□□□□ -0.62
APOBP04114 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
APOBP04114 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC11.2□□□□□ -0.62
APOBP04114 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
APOBP04114 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 PMS2P4-201ENST00000412466 1052 ntBASIC11.2□□□□□ -0.62
APOBP04114 FAM58DP-201ENST00000428076 619 ntBASIC11.2□□□□□ -0.62
APOBP04114 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC11.2□□□□□ -0.62
APOBP04114 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC11.2□□□□□ -0.62
APOBP04114 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC11.2□□□□□ -0.62
APOBP04114 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC11.2□□□□□ -0.62
APOBP04114 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
APOBP04114 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
APOBP04114 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC11.2□□□□□ -0.62
APOBP04114 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms