Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC22.02■■□□□ 1.11
COL4A1P02462 HLA-J-201ENST00000462773 1622 ntBASIC22.01■■□□□ 1.11
COL4A1P02462 ADM-208ENST00000534464 1640 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.01■■□□□ 1.11
COL4A1P02462 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 SOD2-201ENST00000337404 991 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC22.01■■□□□ 1.11
COL4A1P02462 AC009947.1-201ENST00000444350 727 ntBASIC22.01■■□□□ 1.11
COL4A1P02462 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC22.01■■□□□ 1.11
COL4A1P02462 COX5A-204ENST00000567270 579 ntTSL 3 BASIC22.01■■□□□ 1.11
COL4A1P02462 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.01■■□□□ 1.11
COL4A1P02462 AC073592.3-201ENST00000625118 1834 ntBASIC22.01■■□□□ 1.11
COL4A1P02462 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL4A1P02462 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22■■□□□ 1.11
COL4A1P02462 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
COL4A1P02462 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC22■■□□□ 1.11
COL4A1P02462 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22■■□□□ 1.11
COL4A1P02462 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
COL4A1P02462 ELK2BP-201ENST00000415014 1224 ntBASIC22■■□□□ 1.11
COL4A1P02462 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC22■■□□□ 1.11
COL4A1P02462 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC22■■□□□ 1.11
COL4A1P02462 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC22■■□□□ 1.11
COL4A1P02462 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
COL4A1P02462 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL4A1P02462 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
COL4A1P02462 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.99■■□□□ 1.11
COL4A1P02462 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.99■■□□□ 1.11
COL4A1P02462 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
COL4A1P02462 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.99■■□□□ 1.11
COL4A1P02462 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.99■■□□□ 1.11
COL4A1P02462 FAM220CP-201ENST00000395253 831 ntBASIC21.99■■□□□ 1.11
COL4A1P02462 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC21.99■■□□□ 1.11
COL4A1P02462 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.99■■□□□ 1.11
COL4A1P02462 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
COL4A1P02462 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL4A1P02462 ZNF259P1-201ENST00000407656 1365 ntBASIC21.99■■□□□ 1.11
COL4A1P02462 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.99■■□□□ 1.11
COL4A1P02462 SIRPAP1-201ENST00000448467 1770 ntBASIC21.99■■□□□ 1.11
COL4A1P02462 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.99■■□□□ 1.11
COL4A1P02462 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
COL4A1P02462 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC21.98■■□□□ 1.11
COL4A1P02462 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.98■■□□□ 1.11
COL4A1P02462 FAM197Y3-203ENST00000618346 717 ntBASIC21.98■■□□□ 1.11
COL4A1P02462 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.98■■□□□ 1.11
COL4A1P02462 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.98■■□□□ 1.11
COL4A1P02462 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.98■■□□□ 1.11
COL4A1P02462 SIGLEC16-201ENST00000599858 1437 ntBASIC21.98■■□□□ 1.11
COL4A1P02462 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.98■■□□□ 1.11
COL4A1P02462 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.98■■□□□ 1.11
COL4A1P02462 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.98■■□□□ 1.11
COL4A1P02462 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 YBX2P1-201ENST00000394192 760 ntBASIC21.98■■□□□ 1.11
COL4A1P02462 LAGE3P1-201ENST00000425356 484 ntBASIC21.98■■□□□ 1.11
COL4A1P02462 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL4A1P02462 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.98■■□□□ 1.11
COL4A1P02462 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.97■■□□□ 1.11
COL4A1P02462 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.97■■□□□ 1.11
COL4A1P02462 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.97■■□□□ 1.11
COL4A1P02462 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms