Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.63■□□□□ 0.41
TNFP01375 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.63■□□□□ 0.41
TNFP01375 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.63■□□□□ 0.41
TNFP01375 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.63■□□□□ 0.41
TNFP01375 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.63■□□□□ 0.41
TNFP01375 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.63■□□□□ 0.41
TNFP01375 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TNFP01375 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TNFP01375 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.63■□□□□ 0.41
TNFP01375 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TNFP01375 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.62■□□□□ 0.41
TNFP01375 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.62■□□□□ 0.41
TNFP01375 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.62■□□□□ 0.41
TNFP01375 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
TNFP01375 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.62■□□□□ 0.41
TNFP01375 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.62■□□□□ 0.41
TNFP01375 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 AC064862.7-201ENST00000604520 867 ntBASIC17.62■□□□□ 0.41
TNFP01375 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.62■□□□□ 0.41
TNFP01375 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.62■□□□□ 0.41
TNFP01375 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
TNFP01375 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.62■□□□□ 0.41
TNFP01375 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.62■□□□□ 0.41
TNFP01375 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TNFP01375 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.62■□□□□ 0.41
TNFP01375 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TNFP01375 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TNFP01375 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TNFP01375 INTS4P1-201ENST00000438455 1935 ntBASIC17.61■□□□□ 0.41
TNFP01375 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.61■□□□□ 0.41
TNFP01375 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.61■□□□□ 0.41
TNFP01375 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.61■□□□□ 0.41
TNFP01375 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.61■□□□□ 0.41
TNFP01375 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
TNFP01375 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.61■□□□□ 0.41
TNFP01375 AC011467.2-201ENST00000598425 242 ntBASIC17.61■□□□□ 0.41
TNFP01375 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.61■□□□□ 0.41
TNFP01375 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.61■□□□□ 0.41
TNFP01375 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.61■□□□□ 0.41
TNFP01375 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.61■□□□□ 0.41
TNFP01375 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.61■□□□□ 0.41
TNFP01375 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
TNFP01375 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TNFP01375 AC132938.6-201ENST00000623828 1655 ntBASIC17.61■□□□□ 0.41
TNFP01375 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.61■□□□□ 0.41
TNFP01375 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.61■□□□□ 0.41
TNFP01375 BX323043.1-201ENST00000641006 1765 ntBASIC17.61■□□□□ 0.41
TNFP01375 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
TNFP01375 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.6■□□□□ 0.41
TNFP01375 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
TNFP01375 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.6■□□□□ 0.41
TNFP01375 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.6■□□□□ 0.41
TNFP01375 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.6■□□□□ 0.41
TNFP01375 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.6■□□□□ 0.41
TNFP01375 AC008608.2-201ENST00000606089 416 ntBASIC17.6■□□□□ 0.41
TNFP01375 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.6■□□□□ 0.41
TNFP01375 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.6■□□□□ 0.41
TNFP01375 AC022898.2-201ENST00000616822 1312 ntBASIC17.6■□□□□ 0.41
TNFP01375 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.6■□□□□ 0.41
TNFP01375 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.6■□□□□ 0.41
TNFP01375 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TNFP01375 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TNFP01375 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms