Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CLDN3O15551 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CLDN3O15551 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.76■□□□□ 0.75
CLDN3O15551 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.76■□□□□ 0.75
CLDN3O15551 AC092119.3-201ENST00000612618 583 ntBASIC19.76■□□□□ 0.75
CLDN3O15551 AC124864.1-201ENST00000623408 392 ntBASIC19.76■□□□□ 0.75
CLDN3O15551 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.76■□□□□ 0.75
CLDN3O15551 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.76■□□□□ 0.75
CLDN3O15551 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CLDN3O15551 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 LINC00167-201ENST00000530583 1419 ntBASIC19.76■□□□□ 0.75
CLDN3O15551 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN3O15551 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
CLDN3O15551 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CLDN3O15551 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 AC018470.1-201ENST00000624790 3129 ntBASIC19.75■□□□□ 0.75
CLDN3O15551 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 HCG4P8-203ENST00000443049 980 ntBASIC19.75■□□□□ 0.75
CLDN3O15551 RN7SL606P-201ENST00000472779 293 ntBASIC19.75■□□□□ 0.75
CLDN3O15551 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CLDN3O15551 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
CLDN3O15551 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.75■□□□□ 0.75
CLDN3O15551 AC092329.2-201ENST00000598402 547 ntBASIC19.75■□□□□ 0.75
CLDN3O15551 AL592071.1-201ENST00000611956 408 ntBASIC19.75■□□□□ 0.75
CLDN3O15551 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN3O15551 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.75■□□□□ 0.75
CLDN3O15551 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CLDN3O15551 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CLDN3O15551 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CLDN3O15551 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
CLDN3O15551 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 AL096828.2-201ENST00000567259 1965 ntBASIC19.74■□□□□ 0.75
CLDN3O15551 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 DRAXINP1-201ENST00000437611 948 ntBASIC19.74■□□□□ 0.75
CLDN3O15551 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.74■□□□□ 0.75
CLDN3O15551 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLDN3O15551 MIR3180-1-201ENST00000580374 94 ntBASIC19.74■□□□□ 0.75
CLDN3O15551 MIR3180-3-201ENST00000584616 94 ntBASIC19.74■□□□□ 0.75
CLDN3O15551 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.74■□□□□ 0.75
CLDN3O15551 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
CLDN3O15551 AC009154.2-201ENST00000621177 724 ntBASIC19.74■□□□□ 0.75
CLDN3O15551 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.74■□□□□ 0.75
CLDN3O15551 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.74■□□□□ 0.75
CLDN3O15551 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN3O15551 BICD1-207ENST00000551848 1962 ntBASIC19.74■□□□□ 0.75
CLDN3O15551 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.73■□□□□ 0.75
CLDN3O15551 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 AC093010.1-201ENST00000473625 1624 ntBASIC19.73■□□□□ 0.75
CLDN3O15551 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.73■□□□□ 0.75
CLDN3O15551 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.73■□□□□ 0.75
CLDN3O15551 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CLDN3O15551 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CLDN3O15551 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.73■□□□□ 0.75
CLDN3O15551 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.73■□□□□ 0.75
CLDN3O15551 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.73■□□□□ 0.75
CLDN3O15551 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN3O15551 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.73■□□□□ 0.75
CLDN3O15551 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms