Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 ADM-208ENST00000534464 1640 ntTSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 MTDHP5-201ENST00000598980 586 ntBASIC31.16■■■□□ 2.58
CCDC88BA6NC98 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 AC006504.4-201ENST00000592118 1568 ntBASIC31.16■■■□□ 2.58
CCDC88BA6NC98 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 AC022898.2-201ENST00000616822 1312 ntBASIC31.16■■■□□ 2.58
CCDC88BA6NC98 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC31.16■■■□□ 2.58
CCDC88BA6NC98 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 AC108073.2-201ENST00000464002 357 ntBASIC31.15■■■□□ 2.58
CCDC88BA6NC98 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 AC005593.1-201ENST00000624894 515 ntBASIC31.15■■■□□ 2.58
CCDC88BA6NC98 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC88BA6NC98 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 AL589182.2-201ENST00000619332 1049 ntBASIC31.14■■■□□ 2.58
CCDC88BA6NC98 AC092865.6-201ENST00000642101 219 ntBASIC31.14■■■□□ 2.58
CCDC88BA6NC98 AC132938.5-201ENST00000624980 1813 ntBASIC31.14■■■□□ 2.58
CCDC88BA6NC98 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC31.14■■■□□ 2.58
CCDC88BA6NC98 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC31.14■■■□□ 2.57
CCDC88BA6NC98 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 AL031598.1-201ENST00000561511 1773 ntBASIC31.13■■■□□ 2.57
CCDC88BA6NC98 AC002310.6-201ENST00000624451 1377 ntBASIC31.13■■■□□ 2.57
CCDC88BA6NC98 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 CYB561-217ENST00000582997 877 ntTSL 5 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88BA6NC98 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 PHGDH-209ENST00000641074 1780 ntBASIC31.12■■■□□ 2.57
CCDC88BA6NC98 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88BA6NC98 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms