Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
UBQLN3Q9H347 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.9■■□□□ 1.26
UBQLN3Q9H347 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC22.9■■□□□ 1.26
UBQLN3Q9H347 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.9■■□□□ 1.26
UBQLN3Q9H347 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
UBQLN3Q9H347 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
UBQLN3Q9H347 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
UBQLN3Q9H347 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
UBQLN3Q9H347 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
UBQLN3Q9H347 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
UBQLN3Q9H347 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.89■■□□□ 1.25
UBQLN3Q9H347 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.89■■□□□ 1.25
UBQLN3Q9H347 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.89■■□□□ 1.25
UBQLN3Q9H347 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
UBQLN3Q9H347 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC22.89■■□□□ 1.25
UBQLN3Q9H347 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UBQLN3Q9H347 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UBQLN3Q9H347 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
UBQLN3Q9H347 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
UBQLN3Q9H347 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UBQLN3Q9H347 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
UBQLN3Q9H347 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UBQLN3Q9H347 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.87■■□□□ 1.25
UBQLN3Q9H347 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.87■■□□□ 1.25
UBQLN3Q9H347 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
UBQLN3Q9H347 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
UBQLN3Q9H347 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
UBQLN3Q9H347 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
UBQLN3Q9H347 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
UBQLN3Q9H347 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC22.86■■□□□ 1.25
UBQLN3Q9H347 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
UBQLN3Q9H347 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
UBQLN3Q9H347 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
UBQLN3Q9H347 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
UBQLN3Q9H347 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.85■■□□□ 1.25
UBQLN3Q9H347 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
UBQLN3Q9H347 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
UBQLN3Q9H347 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
UBQLN3Q9H347 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
UBQLN3Q9H347 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
UBQLN3Q9H347 GPX1-201ENST00000419349 1106 ntBASIC22.84■■□□□ 1.25
UBQLN3Q9H347 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
UBQLN3Q9H347 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.84■■□□□ 1.25
UBQLN3Q9H347 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
UBQLN3Q9H347 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.84■■□□□ 1.25
UBQLN3Q9H347 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
UBQLN3Q9H347 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
UBQLN3Q9H347 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.82■■□□□ 1.24
UBQLN3Q9H347 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
UBQLN3Q9H347 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
UBQLN3Q9H347 CEP120-209ENST00000515110 606 ntTSL 3 BASIC22.81■■□□□ 1.24
UBQLN3Q9H347 BRD4-212ENST00000630599 726 ntTSL 2 BASIC22.81■■□□□ 1.24
UBQLN3Q9H347 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
UBQLN3Q9H347 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
UBQLN3Q9H347 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC22.8■■□□□ 1.24
UBQLN3Q9H347 AC022413.1-201ENST00000624602 984 ntBASIC22.8■■□□□ 1.24
UBQLN3Q9H347 AC018358.1-201ENST00000631079 1402 ntBASIC22.8■■□□□ 1.24
UBQLN3Q9H347 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.8■■□□□ 1.24
UBQLN3Q9H347 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
UBQLN3Q9H347 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.8■■□□□ 1.24
UBQLN3Q9H347 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC22.79■■□□□ 1.24
UBQLN3Q9H347 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 AC060814.1-201ENST00000554326 538 ntBASIC22.78■■□□□ 1.24
UBQLN3Q9H347 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
UBQLN3Q9H347 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 MED25-210ENST00000612854 801 ntTSL 5 BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 MED25-214ENST00000622402 642 ntTSL 5 BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 RNF126P1-201ENST00000567452 1320 ntBASIC22.76■■□□□ 1.23
UBQLN3Q9H347 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
UBQLN3Q9H347 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.75■■□□□ 1.23
UBQLN3Q9H347 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
UBQLN3Q9H347 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC22.74■■□□□ 1.23
UBQLN3Q9H347 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms