Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC35.15■■■■□ 3.22
MSH6P52701 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC35.15■■■■□ 3.22
MSH6P52701 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC35.14■■■■□ 3.22
MSH6P52701 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC35.14■■■■□ 3.22
MSH6P52701 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC35.14■■■■□ 3.22
MSH6P52701 AL135925.1-201ENST00000605920 1701 ntBASIC35.13■■■■□ 3.21
MSH6P52701 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC35.13■■■■□ 3.21
MSH6P52701 IDNK-201ENST00000376417 511 ntTSL 5 BASIC35.13■■■■□ 3.21
MSH6P52701 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
MSH6P52701 AC018755.3-202ENST00000596210 929 ntBASIC35.13■■■■□ 3.21
MSH6P52701 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC35.12■■■■□ 3.21
MSH6P52701 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
MSH6P52701 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC35.12■■■■□ 3.21
MSH6P52701 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
MSH6P52701 AC008406.3-201ENST00000620001 1374 ntBASIC35.11■■■■□ 3.21
MSH6P52701 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC35.11■■■■□ 3.21
MSH6P52701 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC35.11■■■■□ 3.21
MSH6P52701 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
MSH6P52701 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC35.1■■■■□ 3.21
MSH6P52701 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC35.1■■■■□ 3.21
MSH6P52701 MIR3960-201ENST00000583311 91 ntBASIC35.1■■■■□ 3.21
MSH6P52701 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC35.09■■■■□ 3.21
MSH6P52701 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
MSH6P52701 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
MSH6P52701 PFN2-211ENST00000489155 636 ntTSL 4 BASIC35.08■■■■□ 3.21
MSH6P52701 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC35.08■■■■□ 3.21
MSH6P52701 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC35.08■■■■□ 3.21
MSH6P52701 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
MSH6P52701 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC35.07■■■■□ 3.2
MSH6P52701 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC35.07■■■■□ 3.2
MSH6P52701 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
MSH6P52701 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
MSH6P52701 IDNK-203ENST00000405990 629 ntTSL 2 BASIC35.06■■■■□ 3.2
MSH6P52701 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
MSH6P52701 RNF146-205ENST00000477776 762 ntTSL 3 BASIC35.04■■■■□ 3.2
MSH6P52701 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
MSH6P52701 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
MSH6P52701 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC35.03■■■■□ 3.2
MSH6P52701 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC35.03■■■■□ 3.2
MSH6P52701 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
MSH6P52701 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
MSH6P52701 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
MSH6P52701 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
MSH6P52701 AC239859.2-201ENST00000444165 318 ntBASIC35.01■■■■□ 3.2
MSH6P52701 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC35■■■■□ 3.19
MSH6P52701 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC35■■■■□ 3.19
MSH6P52701 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC35■■■■□ 3.19
MSH6P52701 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3.19
MSH6P52701 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
MSH6P52701 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC35■■■■□ 3.19
MSH6P52701 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC35■■■■□ 3.19
MSH6P52701 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
MSH6P52701 MTX2-204ENST00000443241 799 ntTSL 3 BASIC34.99■■■■□ 3.19
MSH6P52701 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC34.97■■■■□ 3.19
MSH6P52701 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC34.97■■■■□ 3.19
MSH6P52701 GRAMD4P7-201ENST00000578182 1232 ntBASIC34.96■■■■□ 3.19
MSH6P52701 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC34.95■■■■□ 3.19
MSH6P52701 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
MSH6P52701 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC34.95■■■■□ 3.19
MSH6P52701 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC34.95■■■■□ 3.18
MSH6P52701 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC34.94■■■■□ 3.18
MSH6P52701 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
MSH6P52701 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
MSH6P52701 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC34.94■■■■□ 3.18
MSH6P52701 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC34.94■■■■□ 3.18
MSH6P52701 Z92544.1-202ENST00000571933 1220 ntBASIC34.94■■■■□ 3.18
MSH6P52701 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC34.94■■■■□ 3.18
MSH6P52701 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC34.94■■■■□ 3.18
MSH6P52701 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC34.93■■■■□ 3.18
MSH6P52701 CREM-229ENST00000474362 1030 ntTSL 2 BASIC34.93■■■■□ 3.18
MSH6P52701 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC34.93■■■■□ 3.18
MSH6P52701 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
MSH6P52701 PEMT-206ENST00000435340 960 ntTSL 5 BASIC34.92■■■■□ 3.18
MSH6P52701 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC34.91■■■■□ 3.18
MSH6P52701 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC34.91■■■■□ 3.18
MSH6P52701 MIR638-201ENST00000385237 100 ntBASIC34.9■■■■□ 3.18
MSH6P52701 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC34.9■■■■□ 3.18
MSH6P52701 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC34.88■■■■□ 3.17
MSH6P52701 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
MSH6P52701 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC34.87■■■■□ 3.17
MSH6P52701 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC34.87■■■■□ 3.17
MSH6P52701 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
MSH6P52701 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC34.87■■■■□ 3.17
MSH6P52701 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
MSH6P52701 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC34.86■■■■□ 3.17
MSH6P52701 TK2-216ENST00000564917 1156 ntTSL 3 BASIC34.86■■■■□ 3.17
MSH6P52701 AC019171.1-201ENST00000601251 1056 ntBASIC34.86■■■■□ 3.17
MSH6P52701 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.17
MSH6P52701 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC34.84■■■■□ 3.17
MSH6P52701 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
MSH6P52701 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC34.83■■■■□ 3.17
MSH6P52701 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC34.83■■■■□ 3.17
MSH6P52701 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC34.82■■■■□ 3.17
MSH6P52701 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC34.82■■■■□ 3.16
MSH6P52701 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
MSH6P52701 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC34.8■■■■□ 3.16
MSH6P52701 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC34.8■■■■□ 3.16
MSH6P52701 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
MSH6P52701 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC34.79■■■■□ 3.16
MSH6P52701 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms