Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
MSH5O43196 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
MSH5O43196 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC32.85■■■□□ 2.85
MSH5O43196 AC092296.2-201ENST00000589470 999 ntBASIC32.85■■■□□ 2.85
MSH5O43196 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC32.85■■■□□ 2.85
MSH5O43196 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
MSH5O43196 Z99916.3-201ENST00000623422 1080 ntBASIC32.84■■■□□ 2.85
MSH5O43196 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC32.83■■■□□ 2.85
MSH5O43196 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
MSH5O43196 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
MSH5O43196 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
MSH5O43196 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
MSH5O43196 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
MSH5O43196 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC32.82■■■□□ 2.84
MSH5O43196 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC32.82■■■□□ 2.84
MSH5O43196 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC32.82■■■□□ 2.84
MSH5O43196 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC32.82■■■□□ 2.84
MSH5O43196 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC32.81■■■□□ 2.84
MSH5O43196 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
MSH5O43196 AC135983.2-203ENST00000454486 1613 ntBASIC32.81■■■□□ 2.84
MSH5O43196 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC32.81■■■□□ 2.84
MSH5O43196 DUX4L18-201ENST00000553347 1267 ntBASIC32.81■■■□□ 2.84
MSH5O43196 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC32.81■■■□□ 2.84
MSH5O43196 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC32.81■■■□□ 2.84
MSH5O43196 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
MSH5O43196 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
MSH5O43196 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
MSH5O43196 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
MSH5O43196 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC32.8■■■□□ 2.84
MSH5O43196 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC32.8■■■□□ 2.84
MSH5O43196 MIR219A2-201ENST00000608502 1504 ntBASIC32.79■■■□□ 2.84
MSH5O43196 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC32.79■■■□□ 2.84
MSH5O43196 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
MSH5O43196 ECEL1P2-201ENST00000461596 1295 ntBASIC32.79■■■□□ 2.84
MSH5O43196 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
MSH5O43196 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
MSH5O43196 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
MSH5O43196 AC127502.1-201ENST00000399971 1502 ntBASIC32.77■■■□□ 2.84
MSH5O43196 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC32.77■■■□□ 2.84
MSH5O43196 AL035685.1-201ENST00000636663 812 ntBASIC32.77■■■□□ 2.84
MSH5O43196 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
MSH5O43196 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.84
MSH5O43196 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
MSH5O43196 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
MSH5O43196 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
MSH5O43196 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC32.75■■■□□ 2.83
MSH5O43196 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.75■■■□□ 2.83
MSH5O43196 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
MSH5O43196 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
MSH5O43196 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC32.74■■■□□ 2.83
MSH5O43196 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
MSH5O43196 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32.73■■■□□ 2.83
MSH5O43196 MTURN-203ENST00000409688 843 ntTSL 2 BASIC32.73■■■□□ 2.83
MSH5O43196 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
MSH5O43196 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
MSH5O43196 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC32.73■■■□□ 2.83
MSH5O43196 AL592295.1-201ENST00000400984 884 ntBASIC32.72■■■□□ 2.83
MSH5O43196 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC32.72■■■□□ 2.83
MSH5O43196 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC32.72■■■□□ 2.83
MSH5O43196 NIFKP4-201ENST00000567275 1192 ntBASIC32.72■■■□□ 2.83
MSH5O43196 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
MSH5O43196 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
MSH5O43196 AL451085.2-201ENST00000605085 799 ntBASIC32.7■■■□□ 2.83
MSH5O43196 AC129492.7-201ENST00000622992 756 ntBASIC32.7■■■□□ 2.83
MSH5O43196 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC32.7■■■□□ 2.82
MSH5O43196 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
MSH5O43196 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC32.69■■■□□ 2.82
MSH5O43196 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
MSH5O43196 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC32.69■■■□□ 2.82
MSH5O43196 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC32.68■■■□□ 2.82
MSH5O43196 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC32.68■■■□□ 2.82
MSH5O43196 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
MSH5O43196 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
MSH5O43196 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC32.68■■■□□ 2.82
MSH5O43196 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
MSH5O43196 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC32.68■■■□□ 2.82
MSH5O43196 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
MSH5O43196 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
MSH5O43196 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.68■■■□□ 2.82
MSH5O43196 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.67■■■□□ 2.82
MSH5O43196 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
MSH5O43196 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
MSH5O43196 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
MSH5O43196 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC32.67■■■□□ 2.82
MSH5O43196 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
MSH5O43196 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
MSH5O43196 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
MSH5O43196 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
MSH5O43196 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
MSH5O43196 AC019069.1-201ENST00000610008 1333 ntBASIC32.66■■■□□ 2.82
MSH5O43196 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
MSH5O43196 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
MSH5O43196 RPS2-210ENST00000530225 765 ntTSL 2 BASIC32.65■■■□□ 2.82
MSH5O43196 TRIR-205ENST00000592273 783 ntTSL 3 BASIC32.65■■■□□ 2.82
MSH5O43196 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
MSH5O43196 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC32.64■■■□□ 2.82
MSH5O43196 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC32.64■■■□□ 2.82
MSH5O43196 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC32.64■■■□□ 2.82
MSH5O43196 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
MSH5O43196 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms