Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
UPK1AO00322 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.48■■□□□ 1.35
UPK1AO00322 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
UPK1AO00322 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
UPK1AO00322 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
UPK1AO00322 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
UPK1AO00322 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.46■■□□□ 1.35
UPK1AO00322 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
UPK1AO00322 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.35
UPK1AO00322 AC145676.1-201ENST00000514988 2004 ntBASIC23.45■■□□□ 1.35
UPK1AO00322 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
UPK1AO00322 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.45■■□□□ 1.34
UPK1AO00322 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
UPK1AO00322 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
UPK1AO00322 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
UPK1AO00322 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.44■■□□□ 1.34
UPK1AO00322 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.44■■□□□ 1.34
UPK1AO00322 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.44■■□□□ 1.34
UPK1AO00322 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
UPK1AO00322 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
UPK1AO00322 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.43■■□□□ 1.34
UPK1AO00322 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
UPK1AO00322 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.34
UPK1AO00322 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.42■■□□□ 1.34
UPK1AO00322 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
UPK1AO00322 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
UPK1AO00322 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.41■■□□□ 1.34
UPK1AO00322 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
UPK1AO00322 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
UPK1AO00322 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
UPK1AO00322 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.4■■□□□ 1.34
UPK1AO00322 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
UPK1AO00322 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
UPK1AO00322 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
UPK1AO00322 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
UPK1AO00322 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
UPK1AO00322 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.39■■□□□ 1.34
UPK1AO00322 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
UPK1AO00322 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
UPK1AO00322 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.39■■□□□ 1.33
UPK1AO00322 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.39■■□□□ 1.33
UPK1AO00322 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.39■■□□□ 1.33
UPK1AO00322 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.38■■□□□ 1.33
UPK1AO00322 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
UPK1AO00322 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
UPK1AO00322 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
UPK1AO00322 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.38■■□□□ 1.33
UPK1AO00322 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPK1AO00322 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.37■■□□□ 1.33
UPK1AO00322 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
UPK1AO00322 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
UPK1AO00322 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.37■■□□□ 1.33
UPK1AO00322 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
UPK1AO00322 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
UPK1AO00322 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.36■■□□□ 1.33
UPK1AO00322 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
UPK1AO00322 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
UPK1AO00322 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.36■■□□□ 1.33
UPK1AO00322 CR559946.2-201ENST00000623684 991 ntBASIC23.36■■□□□ 1.33
UPK1AO00322 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.36■■□□□ 1.33
UPK1AO00322 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
UPK1AO00322 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
UPK1AO00322 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
UPK1AO00322 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
UPK1AO00322 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
UPK1AO00322 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
UPK1AO00322 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
UPK1AO00322 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
UPK1AO00322 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPK1AO00322 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPK1AO00322 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPK1AO00322 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
UPK1AO00322 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPK1AO00322 AC008813.1-201ENST00000536597 885 ntBASIC23.33■■□□□ 1.33
UPK1AO00322 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
UPK1AO00322 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.32■■□□□ 1.32
UPK1AO00322 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
UPK1AO00322 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
UPK1AO00322 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPK1AO00322 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
UPK1AO00322 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.31■■□□□ 1.32
UPK1AO00322 MIR3648-2-201ENST00000581792 180 ntBASIC23.31■■□□□ 1.32
UPK1AO00322 MIR3648-1-201ENST00000615959 180 ntBASIC23.31■■□□□ 1.32
UPK1AO00322 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.31■■□□□ 1.32
UPK1AO00322 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPK1AO00322 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.3■■□□□ 1.32
UPK1AO00322 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPK1AO00322 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPK1AO00322 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
UPK1AO00322 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPK1AO00322 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.3■■□□□ 1.32
UPK1AO00322 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.3■■□□□ 1.32
UPK1AO00322 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPK1AO00322 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPK1AO00322 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UPK1AO00322 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPK1AO00322 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
UPK1AO00322 MIR7108-201ENST00000614319 87 ntBASIC23.29■■□□□ 1.32
UPK1AO00322 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPK1AO00322 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms