Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 AC211486.1-202ENST00000416371 468 ntBASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 AC211476.1-201ENST00000503899 468 ntBASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 COPE-211ENST00000600932 1144 ntTSL 5 BASIC34.27■■■■□ 3.08
SHROOM4Q9ULL8 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC34.26■■■■□ 3.08
SHROOM4Q9ULL8 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC34.26■■■■□ 3.08
SHROOM4Q9ULL8 KRT18P28-201ENST00000453838 1332 ntBASIC34.26■■■■□ 3.08
SHROOM4Q9ULL8 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
SHROOM4Q9ULL8 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 MTDHP5-201ENST00000598980 586 ntBASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC34.26■■■■□ 3.07
SHROOM4Q9ULL8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 CALY-203ENST00000368558 825 ntTSL 5 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 ORC5-208ENST00000626700 344 ntTSL 3 BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
SHROOM4Q9ULL8 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 AC009533.2-201ENST00000543664 586 ntBASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 AC107918.4-202ENST00000641623 219 ntBASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC34.24■■■■□ 3.07
SHROOM4Q9ULL8 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 AC254562.1-201ENST00000417586 456 ntBASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 MCCD1P2-201ENST00000423228 335 ntBASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 UNC93B6-202ENST00000528242 690 ntBASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 LINC00602-201ENST00000629776 2065 ntBASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC34.23■■■■□ 3.07
SHROOM4Q9ULL8 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 BEX3-201ENST00000361298 921 ntTSL 2 BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 ABCD1P5-201ENST00000445663 754 ntBASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
SHROOM4Q9ULL8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
SHROOM4Q9ULL8 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC34.21■■■■□ 3.07
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms