Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PCDH9Q9HC56 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 AP000523.1-201ENST00000398242 1049 ntBASIC18.73■□□□□ 0.59
PCDH9Q9HC56 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 KRT18P57-201ENST00000443599 1254 ntBASIC18.73■□□□□ 0.59
PCDH9Q9HC56 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 LINC01126-201ENST00000623515 1646 ntBASIC18.73■□□□□ 0.59
PCDH9Q9HC56 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 KRT18P55-202ENST00000578578 1546 ntBASIC18.73■□□□□ 0.59
PCDH9Q9HC56 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDH9Q9HC56 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.72■□□□□ 0.59
PCDH9Q9HC56 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDH9Q9HC56 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 AC012317.2-201ENST00000623305 2251 ntBASIC18.71■□□□□ 0.59
PCDH9Q9HC56 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 MIR3180-4-201ENST00000582223 153 ntBASIC18.71■□□□□ 0.59
PCDH9Q9HC56 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms