Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 AC128688.1-201ENST00000487626 519 ntBASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 MIR3917-201ENST00000580971 93 ntBASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 AL157888.1-201ENST00000631930 593 ntBASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 AC020916.1-201ENST00000587762 1774 ntBASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.77■□□□□ 0.6
HERPUD2Q9BSE4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.77■□□□□ 0.59
HERPUD2Q9BSE4 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
HERPUD2Q9BSE4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HERPUD2Q9BSE4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
HERPUD2Q9BSE4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HERPUD2Q9BSE4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HERPUD2Q9BSE4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HERPUD2Q9BSE4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 AL355312.1-201ENST00000407115 2176 ntBASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 AC113347.1-201ENST00000413321 391 ntBASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 KRT18P21-201ENST00000515767 1272 ntBASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HERPUD2Q9BSE4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 RCN1P1-201ENST00000400413 996 ntBASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 HMGA1P5-201ENST00000412453 271 ntBASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 DUTP2-201ENST00000519164 463 ntBASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 AC106820.2-201ENST00000563775 3264 ntBASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HERPUD2Q9BSE4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms