Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 AC093010.1-201ENST00000473625 1624 ntBASIC13.61□□□□□ -0.23
LINC00477Q96M19 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 GRAMD4P1-201ENST00000435181 1110 ntBASIC13.6□□□□□ -0.23
LINC00477Q96M19 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 AC104390.1-201ENST00000555663 520 ntBASIC13.6□□□□□ -0.23
LINC00477Q96M19 AP003071.4-201ENST00000562276 1284 ntBASIC13.6□□□□□ -0.23
LINC00477Q96M19 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 CR769767.2-201ENST00000622735 460 ntBASIC13.6□□□□□ -0.23
LINC00477Q96M19 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 AC116562.4-202ENST00000641738 218 ntBASIC13.6□□□□□ -0.23
LINC00477Q96M19 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 MME-217ENST00000616757 1315 ntTSL 5 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
LINC00477Q96M19 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
LINC00477Q96M19 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 HIST1H2APS4-201ENST00000362070 348 ntBASIC13.59□□□□□ -0.23
LINC00477Q96M19 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 AC112497.1-201ENST00000624824 639 ntBASIC13.59□□□□□ -0.23
LINC00477Q96M19 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
LINC00477Q96M19 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
LINC00477Q96M19 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.23
LINC00477Q96M19 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
LINC00477Q96M19 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 BAALC-201ENST00000297574 801 ntTSL 3 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 MIR718-201ENST00000390190 70 ntBASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms