Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AF186996.4-201ENST00000467186 377 ntBASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 AF238378.1-201ENST00000526806 358 ntBASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 MIR5100-201ENST00000579544 119 ntBASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HDDC3Q8N4P3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HDDC3Q8N4P3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HDDC3Q8N4P3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HDDC3Q8N4P3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HDDC3Q8N4P3 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HDDC3Q8N4P3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 GMCL1P1-201ENST00000463439 1581 ntBASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 HCG11-201ENST00000411553 5696 ntBASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 AL031598.1-201ENST00000561511 1773 ntBASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HDDC3Q8N4P3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 AC005336.2-201ENST00000593183 939 ntBASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 AC126763.1-201ENST00000552015 2118 ntBASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.13■□□□□ 0.49
HDDC3Q8N4P3 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 AL031284.1-201ENST00000419297 478 ntBASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.12■□□□□ 0.49
HDDC3Q8N4P3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms