Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 AP000997.3-201ENST00000623333 2250 ntBASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC116Q8IYX3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 AK4P3-201ENST00000418260 669 ntBASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 TSPY5P-201ENST00000426936 936 ntBASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 AC006011.2-201ENST00000621313 1158 ntBASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 AC079602.3-201ENST00000623931 403 ntBASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 AC093010.1-201ENST00000473625 1624 ntBASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 NOC2LP2-201ENST00000407594 1944 ntBASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 AC068880.1-201ENST00000507289 2297 ntBASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC116Q8IYX3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC116Q8IYX3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 RNF152P1-201ENST00000397754 604 ntBASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 SPDYE15P-201ENST00000424157 909 ntBASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 AC104076.2-201ENST00000448912 469 ntBASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC116Q8IYX3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms