Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 AC005332.7-201ENST00000614046 2005 ntBASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 AC002347.1-201ENST00000569543 541 ntBASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
VPS13DQ5THJ4 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AL049757.1-201ENST00000616842 1596 ntBASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 ELK2BP-201ENST00000415014 1224 ntBASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AC073592.5-201ENST00000624854 528 ntBASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AC005593.1-201ENST00000624894 515 ntBASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AC132938.5-201ENST00000624980 1813 ntBASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 ELL2P1-201ENST00000413990 1906 ntBASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
VPS13DQ5THJ4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 HLA-J-202ENST00000469281 1241 ntBASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC108073.2-201ENST00000464002 357 ntBASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC008687.5-201ENST00000593746 558 ntBASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC027612.4-201ENST00000605371 583 ntBASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 RPS8P6-201ENST00000426177 609 ntBASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
VPS13DQ5THJ4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms