Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
USP39Q53GS9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
USP39Q53GS9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.4■□□□□ 0.54
USP39Q53GS9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 MIR574-201ENST00000385209 96 ntBASIC18.4■□□□□ 0.54
USP39Q53GS9 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
USP39Q53GS9 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
USP39Q53GS9 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.4■□□□□ 0.54
USP39Q53GS9 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.4■□□□□ 0.54
USP39Q53GS9 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.4■□□□□ 0.54
USP39Q53GS9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.4■□□□□ 0.54
USP39Q53GS9 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.4■□□□□ 0.54
USP39Q53GS9 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
USP39Q53GS9 AL671883.3-201ENST00000603274 991 ntBASIC18.4■□□□□ 0.54
USP39Q53GS9 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.4■□□□□ 0.54
USP39Q53GS9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.4■□□□□ 0.54
USP39Q53GS9 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
USP39Q53GS9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP39Q53GS9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
USP39Q53GS9 IRX1P1-201ENST00000438849 1838 ntBASIC18.39■□□□□ 0.54
USP39Q53GS9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
USP39Q53GS9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
USP39Q53GS9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
USP39Q53GS9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
USP39Q53GS9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.39■□□□□ 0.53
USP39Q53GS9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.39■□□□□ 0.53
USP39Q53GS9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.39■□□□□ 0.53
USP39Q53GS9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.39■□□□□ 0.53
USP39Q53GS9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP39Q53GS9 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.39■□□□□ 0.53
USP39Q53GS9 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
USP39Q53GS9 AC091607.1-201ENST00000490318 1060 ntBASIC18.39■□□□□ 0.53
USP39Q53GS9 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.39■□□□□ 0.53
USP39Q53GS9 MIR5100-201ENST00000579544 119 ntBASIC18.39■□□□□ 0.53
USP39Q53GS9 AC139530.3-201ENST00000620344 690 ntBASIC18.39■□□□□ 0.53
USP39Q53GS9 TP73-AS1-207ENST00000624167 988 ntBASIC18.39■□□□□ 0.53
USP39Q53GS9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.39■□□□□ 0.53
USP39Q53GS9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
USP39Q53GS9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP39Q53GS9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
USP39Q53GS9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
USP39Q53GS9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
USP39Q53GS9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.38■□□□□ 0.53
USP39Q53GS9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
USP39Q53GS9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.38■□□□□ 0.53
USP39Q53GS9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.38■□□□□ 0.53
USP39Q53GS9 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 AL031284.1-201ENST00000419297 478 ntBASIC18.38■□□□□ 0.53
USP39Q53GS9 KRT18P67-201ENST00000432816 1264 ntBASIC18.38■□□□□ 0.53
USP39Q53GS9 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.38■□□□□ 0.53
USP39Q53GS9 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.38■□□□□ 0.53
USP39Q53GS9 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
USP39Q53GS9 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.38■□□□□ 0.53
USP39Q53GS9 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.38■□□□□ 0.53
USP39Q53GS9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.38■□□□□ 0.53
USP39Q53GS9 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.38■□□□□ 0.53
USP39Q53GS9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.38■□□□□ 0.53
USP39Q53GS9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
USP39Q53GS9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.38■□□□□ 0.53
USP39Q53GS9 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
USP39Q53GS9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms