Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.68■□□□□ 0.42
YBX1P67809 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
YBX1P67809 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 AC034232.1-201ENST00000506026 1064 ntBASIC17.68■□□□□ 0.42
YBX1P67809 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.68■□□□□ 0.42
YBX1P67809 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.68■□□□□ 0.42
YBX1P67809 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.68■□□□□ 0.42
YBX1P67809 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.68■□□□□ 0.42
YBX1P67809 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
YBX1P67809 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.68■□□□□ 0.42
YBX1P67809 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
YBX1P67809 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
YBX1P67809 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
YBX1P67809 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.68■□□□□ 0.42
YBX1P67809 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.68■□□□□ 0.42
YBX1P67809 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
YBX1P67809 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.67■□□□□ 0.42
YBX1P67809 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 AC099398.1-201ENST00000567919 2776 ntBASIC17.67■□□□□ 0.42
YBX1P67809 AC020916.1-201ENST00000587762 1774 ntBASIC17.67■□□□□ 0.42
YBX1P67809 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 AL671277.2-201ENST00000458060 996 ntBASIC17.67■□□□□ 0.42
YBX1P67809 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.67■□□□□ 0.42
YBX1P67809 MIR3180-4-201ENST00000582223 153 ntBASIC17.67■□□□□ 0.42
YBX1P67809 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 AL590326.2-201ENST00000625139 305 ntBASIC17.67■□□□□ 0.42
YBX1P67809 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.67■□□□□ 0.42
YBX1P67809 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.67■□□□□ 0.42
YBX1P67809 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
YBX1P67809 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
YBX1P67809 LINC01311-201ENST00000565162 1445 ntBASIC17.66■□□□□ 0.42
YBX1P67809 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 PVRIG2P-201ENST00000435460 978 ntBASIC17.66■□□□□ 0.42
YBX1P67809 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.66■□□□□ 0.42
YBX1P67809 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.66■□□□□ 0.42
YBX1P67809 AL136038.4-201ENST00000603606 1261 ntBASIC17.66■□□□□ 0.42
YBX1P67809 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.66■□□□□ 0.42
YBX1P67809 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.66■□□□□ 0.42
YBX1P67809 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
YBX1P67809 AL024508.2-201ENST00000607749 1894 ntBASIC17.66■□□□□ 0.42
YBX1P67809 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
YBX1P67809 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
YBX1P67809 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
YBX1P67809 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
YBX1P67809 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.65■□□□□ 0.42
YBX1P67809 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.65■□□□□ 0.42
YBX1P67809 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
YBX1P67809 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.65■□□□□ 0.42
YBX1P67809 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
YBX1P67809 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
YBX1P67809 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
YBX1P67809 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
YBX1P67809 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 HLA-F-220ENST00000434407 884 ntBASIC17.65■□□□□ 0.42
YBX1P67809 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.65■□□□□ 0.42
YBX1P67809 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
YBX1P67809 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.65■□□□□ 0.42
YBX1P67809 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
YBX1P67809 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms