Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC132938.6-201ENST00000623828 1655 ntBASIC18.94■□□□□ 0.62
HDAC4P56524 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HDAC4P56524 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.93■□□□□ 0.62
HDAC4P56524 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 AC018470.1-201ENST00000624790 3129 ntBASIC18.93■□□□□ 0.62
HDAC4P56524 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.93■□□□□ 0.62
HDAC4P56524 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.93■□□□□ 0.62
HDAC4P56524 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.93■□□□□ 0.62
HDAC4P56524 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.93■□□□□ 0.62
HDAC4P56524 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.93■□□□□ 0.62
HDAC4P56524 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.93■□□□□ 0.62
HDAC4P56524 AC024563.2-201ENST00000603282 481 ntBASIC18.93■□□□□ 0.62
HDAC4P56524 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HDAC4P56524 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
HDAC4P56524 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
HDAC4P56524 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
HDAC4P56524 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.93■□□□□ 0.62
HDAC4P56524 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.93■□□□□ 0.62
HDAC4P56524 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HDAC4P56524 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.93■□□□□ 0.62
HDAC4P56524 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
HDAC4P56524 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.92■□□□□ 0.62
HDAC4P56524 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HDAC4P56524 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.92■□□□□ 0.62
HDAC4P56524 SPDYE13P-201ENST00000445314 798 ntBASIC18.92■□□□□ 0.62
HDAC4P56524 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.92■□□□□ 0.62
HDAC4P56524 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.92■□□□□ 0.62
HDAC4P56524 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.92■□□□□ 0.62
HDAC4P56524 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.92■□□□□ 0.62
HDAC4P56524 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HDAC4P56524 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 AP000997.3-201ENST00000623333 2250 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 LINC00167-201ENST00000530583 1419 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 KRT89P-201ENST00000620027 1478 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 AC005332.8-201ENST00000622750 2735 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.91■□□□□ 0.62
HDAC4P56524 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 VENTXP5-201ENST00000523979 775 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.91■□□□□ 0.62
HDAC4P56524 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
HDAC4P56524 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.91■□□□□ 0.62
HDAC4P56524 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.91■□□□□ 0.62
HDAC4P56524 AC083849.1-201ENST00000615227 514 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.91■□□□□ 0.62
HDAC4P56524 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HDAC4P56524 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms