Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.55■□□□□ 0.4
FOXA1P55317 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
FOXA1P55317 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
FOXA1P55317 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXA1P55317 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.55■□□□□ 0.4
FOXA1P55317 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.55■□□□□ 0.4
FOXA1P55317 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 AC024243.1-201ENST00000609234 778 ntBASIC17.55■□□□□ 0.4
FOXA1P55317 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
FOXA1P55317 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXA1P55317 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
FOXA1P55317 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
FOXA1P55317 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.54■□□□□ 0.4
FOXA1P55317 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.54■□□□□ 0.4
FOXA1P55317 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.54■□□□□ 0.4
FOXA1P55317 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
FOXA1P55317 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
FOXA1P55317 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.54■□□□□ 0.4
FOXA1P55317 AC009947.2-201ENST00000444014 672 ntBASIC17.54■□□□□ 0.4
FOXA1P55317 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXA1P55317 EGLN1P1-201ENST00000531623 762 ntBASIC17.54■□□□□ 0.4
FOXA1P55317 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXA1P55317 AC009065.1-201ENST00000564055 1225 ntBASIC17.54■□□□□ 0.4
FOXA1P55317 AC010947.1-201ENST00000623454 693 ntBASIC17.54■□□□□ 0.4
FOXA1P55317 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 TMEM191A-211ENST00000637163 1067 ntBASIC17.54■□□□□ 0.4
FOXA1P55317 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXA1P55317 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXA1P55317 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
FOXA1P55317 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXA1P55317 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXA1P55317 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXA1P55317 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
FOXA1P55317 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXA1P55317 AL355312.1-201ENST00000407115 2176 ntBASIC17.53■□□□□ 0.4
FOXA1P55317 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
FOXA1P55317 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXA1P55317 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXA1P55317 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXA1P55317 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
FOXA1P55317 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXA1P55317 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXA1P55317 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXA1P55317 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms