Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.29■□□□□ 0.68
COL4A4P53420 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL4A4P53420 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 AL024508.2-201ENST00000607749 1894 ntBASIC19.29■□□□□ 0.68
COL4A4P53420 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 AC002310.6-201ENST00000624451 1377 ntBASIC19.28■□□□□ 0.68
COL4A4P53420 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A4P53420 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A4P53420 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL4A4P53420 MIR149-201ENST00000384879 89 ntBASIC19.28■□□□□ 0.68
COL4A4P53420 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL4A4P53420 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A4P53420 AL596442.2-201ENST00000610240 980 ntBASIC19.28■□□□□ 0.68
COL4A4P53420 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A4P53420 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 AC073592.3-201ENST00000625118 1834 ntBASIC19.28■□□□□ 0.68
COL4A4P53420 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A4P53420 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A4P53420 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 AL035633.1-201ENST00000406139 838 ntBASIC19.27■□□□□ 0.68
COL4A4P53420 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A4P53420 HTR5BP-201ENST00000430851 1154 ntBASIC19.27■□□□□ 0.68
COL4A4P53420 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.27■□□□□ 0.68
COL4A4P53420 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A4P53420 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
COL4A4P53420 AC027612.4-201ENST00000605371 583 ntBASIC19.27■□□□□ 0.68
COL4A4P53420 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.27■□□□□ 0.68
COL4A4P53420 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL4A4P53420 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL4A4P53420 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A4P53420 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A4P53420 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A4P53420 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
COL4A4P53420 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
COL4A4P53420 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.27■□□□□ 0.67
COL4A4P53420 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
COL4A4P53420 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A4P53420 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
COL4A4P53420 LAGE3P1-201ENST00000425356 484 ntBASIC19.27■□□□□ 0.67
COL4A4P53420 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A4P53420 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.27■□□□□ 0.67
COL4A4P53420 AC105339.3-201ENST00000560043 636 ntBASIC19.27■□□□□ 0.67
COL4A4P53420 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.27■□□□□ 0.67
COL4A4P53420 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.27■□□□□ 0.67
COL4A4P53420 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A4P53420 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
COL4A4P53420 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
COL4A4P53420 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A4P53420 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL4A4P53420 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL4A4P53420 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL4A4P53420 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.26■□□□□ 0.67
COL4A4P53420 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A4P53420 AC108751.1-201ENST00000490852 363 ntBASIC19.26■□□□□ 0.67
COL4A4P53420 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
COL4A4P53420 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.26■□□□□ 0.67
COL4A4P53420 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A4P53420 AC064836.3-201ENST00000607928 673 ntBASIC19.26■□□□□ 0.67
COL4A4P53420 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.26■□□□□ 0.67
COL4A4P53420 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 AC079781.4-201ENST00000641908 219 ntBASIC19.26■□□□□ 0.67
COL4A4P53420 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A4P53420 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.26■□□□□ 0.67
COL4A4P53420 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL4A4P53420 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.26■□□□□ 0.67
COL4A4P53420 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A4P53420 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
COL4A4P53420 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL4A4P53420 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms