Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.45■□□□□ 0.86
USP11P51784 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.45■□□□□ 0.86
USP11P51784 AC092119.3-201ENST00000612618 583 ntBASIC20.45■□□□□ 0.86
USP11P51784 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
USP11P51784 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.45■□□□□ 0.86
USP11P51784 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.45■□□□□ 0.86
USP11P51784 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
USP11P51784 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP11P51784 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
USP11P51784 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.44■□□□□ 0.86
USP11P51784 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.44■□□□□ 0.86
USP11P51784 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.44■□□□□ 0.86
USP11P51784 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.44■□□□□ 0.86
USP11P51784 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
USP11P51784 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.44■□□□□ 0.86
USP11P51784 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.44■□□□□ 0.86
USP11P51784 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.44■□□□□ 0.86
USP11P51784 AC011840.4-201ENST00000578471 627 ntBASIC20.44■□□□□ 0.86
USP11P51784 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
USP11P51784 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
USP11P51784 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.44■□□□□ 0.86
USP11P51784 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP11P51784 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
USP11P51784 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
USP11P51784 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 FLJ13224-201ENST00000313737 1514 ntBASIC20.43■□□□□ 0.86
USP11P51784 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
USP11P51784 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.43■□□□□ 0.86
USP11P51784 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.43■□□□□ 0.86
USP11P51784 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
USP11P51784 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.43■□□□□ 0.86
USP11P51784 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.43■□□□□ 0.86
USP11P51784 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.43■□□□□ 0.86
USP11P51784 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 AC233702.3-201ENST00000578656 1387 ntBASIC20.43■□□□□ 0.86
USP11P51784 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.43■□□□□ 0.86
USP11P51784 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.43■□□□□ 0.86
USP11P51784 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
USP11P51784 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP11P51784 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP11P51784 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.42■□□□□ 0.86
USP11P51784 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP11P51784 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP11P51784 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.42■□□□□ 0.86
USP11P51784 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.42■□□□□ 0.86
USP11P51784 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP11P51784 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP11P51784 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.42■□□□□ 0.86
USP11P51784 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP11P51784 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.42■□□□□ 0.86
USP11P51784 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.42■□□□□ 0.86
USP11P51784 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms