Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CTCFP49711 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CTCFP49711 AC093520.2-201ENST00000561830 333 ntBASIC20.92■□□□□ 0.94
CTCFP49711 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 AL390955.2-201ENST00000603032 514 ntBASIC20.92■□□□□ 0.94
CTCFP49711 AC084346.2-201ENST00000607097 949 ntBASIC20.92■□□□□ 0.94
CTCFP49711 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.92■□□□□ 0.94
CTCFP49711 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTCFP49711 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.92■□□□□ 0.94
CTCFP49711 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.92■□□□□ 0.94
CTCFP49711 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CTCFP49711 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CTCFP49711 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.91■□□□□ 0.94
CTCFP49711 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTCFP49711 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CTCFP49711 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
CTCFP49711 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTCFP49711 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTCFP49711 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTCFP49711 AC073621.1-201ENST00000392730 636 ntBASIC20.91■□□□□ 0.94
CTCFP49711 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.91■□□□□ 0.94
CTCFP49711 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.91■□□□□ 0.94
CTCFP49711 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.91■□□□□ 0.94
CTCFP49711 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.91■□□□□ 0.94
CTCFP49711 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.91■□□□□ 0.94
CTCFP49711 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CTCFP49711 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CTCFP49711 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.91■□□□□ 0.94
CTCFP49711 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.91■□□□□ 0.94
CTCFP49711 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.91■□□□□ 0.94
CTCFP49711 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.91■□□□□ 0.94
CTCFP49711 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC20.91■□□□□ 0.94
CTCFP49711 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CTCFP49711 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
CTCFP49711 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CTCFP49711 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 AL512353.2-201ENST00000448759 1962 ntBASIC20.9■□□□□ 0.94
CTCFP49711 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CTCFP49711 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTCFP49711 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTCFP49711 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTCFP49711 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.9■□□□□ 0.94
CTCFP49711 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CTCFP49711 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC20.9■□□□□ 0.94
CTCFP49711 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTCFP49711 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.9■□□□□ 0.94
CTCFP49711 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC20.9■□□□□ 0.94
CTCFP49711 AC068472.1-201ENST00000474589 881 ntBASIC20.9■□□□□ 0.94
CTCFP49711 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.9■□□□□ 0.94
CTCFP49711 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CTCFP49711 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
CTCFP49711 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
CTCFP49711 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTCFP49711 ZNF815P-204ENST00000434898 1737 ntBASIC20.9■□□□□ 0.94
CTCFP49711 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTCFP49711 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTCFP49711 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.94
CTCFP49711 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTCFP49711 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.89■□□□□ 0.93
CTCFP49711 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CTCFP49711 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.93
CTCFP49711 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CTCFP49711 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.89■□□□□ 0.93
CTCFP49711 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.89■□□□□ 0.93
CTCFP49711 AC109322.1-201ENST00000524499 1264 ntBASIC20.89■□□□□ 0.93
CTCFP49711 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.89■□□□□ 0.93
CTCFP49711 RN7SL204P-201ENST00000582831 262 ntBASIC20.89■□□□□ 0.93
CTCFP49711 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC20.89■□□□□ 0.93
CTCFP49711 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.89■□□□□ 0.93
CTCFP49711 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
CTCFP49711 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTCFP49711 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.89■□□□□ 0.93
CTCFP49711 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.88■□□□□ 0.93
CTCFP49711 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.88■□□□□ 0.93
CTCFP49711 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTCFP49711 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CTCFP49711 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTCFP49711 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.88■□□□□ 0.93
CTCFP49711 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.88■□□□□ 0.93
CTCFP49711 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CTCFP49711 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.88■□□□□ 0.93
CTCFP49711 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.88■□□□□ 0.93
CTCFP49711 TFAMP1-201ENST00000412727 736 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms