Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 AC015922.1-201ENST00000421102 1152 ntBASIC21.29■■□□□ 1
SCN4AP35499 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.29■■□□□ 1
SCN4AP35499 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 FAM86GP-201ENST00000448322 971 ntBASIC21.29■■□□□ 1
SCN4AP35499 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.29■■□□□ 1
SCN4AP35499 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SCN4AP35499 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.29■■□□□ 1
SCN4AP35499 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
SCN4AP35499 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.29■■□□□ 1
SCN4AP35499 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.29■■□□□ 1
SCN4AP35499 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.29■■□□□ 1
SCN4AP35499 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.29■■□□□ 1
SCN4AP35499 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SCN4AP35499 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.29■■□□□ 1
SCN4AP35499 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.29■■□□□ 1
SCN4AP35499 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.29■■□□□ 1
SCN4AP35499 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 AC005225.4-201ENST00000557330 545 ntBASIC21.29■■□□□ 1
SCN4AP35499 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SCN4AP35499 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SCN4AP35499 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.28■■□□□ 1
SCN4AP35499 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.28■■□□□ 1
SCN4AP35499 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC21.28■■□□□ 1
SCN4AP35499 AC067863.1-201ENST00000494933 530 ntBASIC21.28■■□□□ 1
SCN4AP35499 AC004835.2-201ENST00000603762 682 ntBASIC21.28■■□□□ 1
SCN4AP35499 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.28■■□□□ 1
SCN4AP35499 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SCN4AP35499 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.28■■□□□ 1
SCN4AP35499 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SCN4AP35499 AL353593.2-201ENST00000602529 1483 ntBASIC21.28■■□□□ 1
SCN4AP35499 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.27■■□□□ 1
SCN4AP35499 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.27■■□□□ 1
SCN4AP35499 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SCN4AP35499 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SCN4AP35499 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.27■■□□□ 1
SCN4AP35499 AC103564.2-201ENST00000432853 1299 ntBASIC21.27■■□□□ 1
SCN4AP35499 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.27■■□□□ 1
SCN4AP35499 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.27■■□□□ 1
SCN4AP35499 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.27■■□□□ 1
SCN4AP35499 AC015911.4-201ENST00000588022 1070 ntBASIC21.27■■□□□ 1
SCN4AP35499 AC073592.5-201ENST00000624854 528 ntBASIC21.27■■□□□ 1
SCN4AP35499 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.27■■□□□ 1
SCN4AP35499 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.27■■□□□ 1
SCN4AP35499 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.27■■□□□ 1
SCN4AP35499 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.27■■□□□ 1
SCN4AP35499 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SCN4AP35499 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.27■■□□□ 1
SCN4AP35499 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SCN4AP35499 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SCN4AP35499 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
SCN4AP35499 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.27■□□□□ 0.99
SCN4AP35499 AL020989.1-201ENST00000422979 469 ntBASIC21.27■□□□□ 0.99
SCN4AP35499 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SCN4AP35499 AC025678.2-201ENST00000562061 970 ntBASIC21.27■□□□□ 0.99
SCN4AP35499 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.27■□□□□ 0.99
SCN4AP35499 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.27■□□□□ 0.99
SCN4AP35499 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SCN4AP35499 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SCN4AP35499 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.27■□□□□ 0.99
SCN4AP35499 BCAR1-209ENST00000546196 1340 ntBASIC21.26■□□□□ 0.99
SCN4AP35499 AC063926.2-201ENST00000623766 1308 ntBASIC21.26■□□□□ 0.99
SCN4AP35499 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.26■□□□□ 0.99
SCN4AP35499 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SCN4AP35499 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.26■□□□□ 0.99
SCN4AP35499 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.26■□□□□ 0.99
SCN4AP35499 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SCN4AP35499 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.26■□□□□ 0.99
SCN4AP35499 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SCN4AP35499 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC21.26■□□□□ 0.99
SCN4AP35499 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SCN4AP35499 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.26■□□□□ 0.99
SCN4AP35499 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SCN4AP35499 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.26■□□□□ 0.99
SCN4AP35499 AL390955.2-201ENST00000603032 514 ntBASIC21.26■□□□□ 0.99
SCN4AP35499 AC105339.1-204ENST00000636249 355 ntBASIC21.26■□□□□ 0.99
SCN4AP35499 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SCN4AP35499 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SCN4AP35499 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SCN4AP35499 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SCN4AP35499 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.25■□□□□ 0.99
SCN4AP35499 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.25■□□□□ 0.99
SCN4AP35499 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.25■□□□□ 0.99
SCN4AP35499 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SCN4AP35499 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.25■□□□□ 0.99
SCN4AP35499 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
SCN4AP35499 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms