Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
CKS2P33552 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC13.36□□□□□ -0.27
CKS2P33552 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CKS2P33552 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC13.36□□□□□ -0.27
CKS2P33552 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CKS2P33552 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC13.35□□□□□ -0.27
CKS2P33552 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.35□□□□□ -0.27
CKS2P33552 AC018695.7-201ENST00000624587 2492 ntBASIC13.35□□□□□ -0.27
CKS2P33552 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC13.35□□□□□ -0.27
CKS2P33552 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.35□□□□□ -0.27
CKS2P33552 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CKS2P33552 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CKS2P33552 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CKS2P33552 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC13.35□□□□□ -0.27
CKS2P33552 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC13.35□□□□□ -0.27
CKS2P33552 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CKS2P33552 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CKS2P33552 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.35□□□□□ -0.27
CKS2P33552 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CKS2P33552 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.35□□□□□ -0.27
CKS2P33552 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CKS2P33552 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CKS2P33552 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC13.35□□□□□ -0.27
CKS2P33552 LINC00602-201ENST00000629776 2065 ntBASIC13.35□□□□□ -0.27
CKS2P33552 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CKS2P33552 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
CKS2P33552 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 AC008894.3-201ENST00000624324 3103 ntBASIC13.34□□□□□ -0.27
CKS2P33552 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 TREX2-204ENST00000370212 861 ntTSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 AC034268.1-201ENST00000441047 882 ntBASIC13.34□□□□□ -0.27
CKS2P33552 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC13.34□□□□□ -0.27
CKS2P33552 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 RHOD-202ENST00000532559 538 ntTSL 3 BASIC13.34□□□□□ -0.27
CKS2P33552 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC13.34□□□□□ -0.27
CKS2P33552 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CKS2P33552 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CKS2P33552 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC13.34□□□□□ -0.27
CKS2P33552 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
CKS2P33552 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.33□□□□□ -0.27
CKS2P33552 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms