Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CXCL1P09341 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 AC007322.1-201ENST00000426983 750 ntBASIC14.08□□□□□ -0.16
CXCL1P09341 LGR4-203ENST00000480977 492 ntTSL 2 BASIC14.08□□□□□ -0.16
CXCL1P09341 ISCU-212ENST00000547005 795 ntTSL 3 BASIC14.08□□□□□ -0.16
CXCL1P09341 AC005829.2-201ENST00000571422 1056 ntBASIC14.08□□□□□ -0.16
CXCL1P09341 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.08□□□□□ -0.16
CXCL1P09341 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC14.08□□□□□ -0.16
CXCL1P09341 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC14.08□□□□□ -0.16
CXCL1P09341 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.08□□□□□ -0.16
CXCL1P09341 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CXCL1P09341 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CXCL1P09341 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CXCL1P09341 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CXCL1P09341 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CXCL1P09341 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.08□□□□□ -0.16
CXCL1P09341 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.08□□□□□ -0.16
CXCL1P09341 TSPY26P-202ENST00000565928 3884 ntBASIC14.08□□□□□ -0.16
CXCL1P09341 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
CXCL1P09341 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CXCL1P09341 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 HACD1-201ENST00000326961 773 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.07□□□□□ -0.16
CXCL1P09341 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 LSM12P1-201ENST00000411836 588 ntBASIC14.07□□□□□ -0.16
CXCL1P09341 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.07□□□□□ -0.16
CXCL1P09341 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC14.07□□□□□ -0.16
CXCL1P09341 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 MDK-213ENST00000617138 635 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 AC011767.1-201ENST00000617410 1153 ntBASIC14.07□□□□□ -0.16
CXCL1P09341 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.07□□□□□ -0.16
CXCL1P09341 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CXCL1P09341 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CXCL1P09341 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC14.06□□□□□ -0.16
CXCL1P09341 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 AL603756.1-201ENST00000606511 2163 ntBASIC14.06□□□□□ -0.16
CXCL1P09341 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CXCL1P09341 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.06□□□□□ -0.16
CXCL1P09341 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC14.06□□□□□ -0.16
CXCL1P09341 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 HES2-206ENST00000489730 730 ntTSL 2 BASIC14.06□□□□□ -0.16
CXCL1P09341 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC14.06□□□□□ -0.16
CXCL1P09341 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CXCL1P09341 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CXCL1P09341 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms