Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC22.06■■□□□ 1.12
COL4A1P02462 AC096633.1-201ENST00000422446 749 ntBASIC22.06■■□□□ 1.12
COL4A1P02462 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC22.06■■□□□ 1.12
COL4A1P02462 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 SDCCAG3P1-201ENST00000589292 1150 ntBASIC22.06■■□□□ 1.12
COL4A1P02462 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC22.06■■□□□ 1.12
COL4A1P02462 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL4A1P02462 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC22.05■■□□□ 1.12
COL4A1P02462 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
COL4A1P02462 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC22.05■■□□□ 1.12
COL4A1P02462 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A1P02462 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
COL4A1P02462 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A1P02462 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A1P02462 AC073621.1-201ENST00000392730 636 ntBASIC22.05■■□□□ 1.12
COL4A1P02462 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.05■■□□□ 1.12
COL4A1P02462 AC093909.1-201ENST00000504731 1122 ntBASIC22.05■■□□□ 1.12
COL4A1P02462 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC22.05■■□□□ 1.12
COL4A1P02462 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC22.05■■□□□ 1.12
COL4A1P02462 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
COL4A1P02462 AD001527.2-201ENST00000622994 785 ntBASIC22.05■■□□□ 1.12
COL4A1P02462 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A1P02462 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
COL4A1P02462 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A1P02462 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A1P02462 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC22.05■■□□□ 1.12
COL4A1P02462 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
COL4A1P02462 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL4A1P02462 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 MED15P5-201ENST00000423150 992 ntBASIC22.04■■□□□ 1.12
COL4A1P02462 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC22.04■■□□□ 1.12
COL4A1P02462 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
COL4A1P02462 RPS29-206ENST00000557111 488 ntTSL 2 BASIC22.04■■□□□ 1.12
COL4A1P02462 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC22.04■■□□□ 1.12
COL4A1P02462 AC073592.4-201ENST00000623827 446 ntBASIC22.04■■□□□ 1.12
COL4A1P02462 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.04■■□□□ 1.12
COL4A1P02462 PMS2P7-201ENST00000506558 1336 ntBASIC22.04■■□□□ 1.12
COL4A1P02462 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
COL4A1P02462 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC22.04■■□□□ 1.12
COL4A1P02462 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.04■■□□□ 1.12
COL4A1P02462 MIR1233-2-201ENST00000408138 82 ntBASIC22.04■■□□□ 1.12
COL4A1P02462 MIR1233-1-201ENST00000408722 82 ntBASIC22.04■■□□□ 1.12
COL4A1P02462 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC22.04■■□□□ 1.12
COL4A1P02462 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC22.04■■□□□ 1.12
COL4A1P02462 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
COL4A1P02462 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
COL4A1P02462 AC100803.2-201ENST00000562459 1963 ntBASIC22.03■■□□□ 1.12
COL4A1P02462 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A1P02462 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.03■■□□□ 1.12
COL4A1P02462 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.03■■□□□ 1.12
COL4A1P02462 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A1P02462 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A1P02462 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A1P02462 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A1P02462 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC22.03■■□□□ 1.12
COL4A1P02462 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC22.03■■□□□ 1.12
COL4A1P02462 UNC93B6-202ENST00000528242 690 ntBASIC22.03■■□□□ 1.12
COL4A1P02462 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC22.03■■□□□ 1.12
COL4A1P02462 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC22.03■■□□□ 1.12
COL4A1P02462 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A1P02462 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
COL4A1P02462 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.03■■□□□ 1.12
COL4A1P02462 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
COL4A1P02462 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
COL4A1P02462 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC22.02■■□□□ 1.12
COL4A1P02462 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC22.02■■□□□ 1.12
COL4A1P02462 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC22.02■■□□□ 1.12
COL4A1P02462 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
COL4A1P02462 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC22.02■■□□□ 1.12
COL4A1P02462 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC22.02■■□□□ 1.12
COL4A1P02462 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC22.02■■□□□ 1.12
COL4A1P02462 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC22.02■■□□□ 1.12
COL4A1P02462 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC22.02■■□□□ 1.12
COL4A1P02462 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
COL4A1P02462 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL4A1P02462 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
COL4A1P02462 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms