Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.54■□□□□ 0.4
LDLRP01130 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.54■□□□□ 0.4
LDLRP01130 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.54■□□□□ 0.4
LDLRP01130 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.54■□□□□ 0.4
LDLRP01130 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 HEIH-201ENST00000623091 1652 ntBASIC17.54■□□□□ 0.4
LDLRP01130 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LDLRP01130 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.54■□□□□ 0.4
LDLRP01130 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
LDLRP01130 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.54■□□□□ 0.4
LDLRP01130 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.54■□□□□ 0.4
LDLRP01130 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
LDLRP01130 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.53■□□□□ 0.4
LDLRP01130 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
LDLRP01130 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LDLRP01130 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.53■□□□□ 0.4
LDLRP01130 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.53■□□□□ 0.4
LDLRP01130 TSPY5P-201ENST00000426936 936 ntBASIC17.53■□□□□ 0.4
LDLRP01130 FAM207BP-201ENST00000447172 505 ntBASIC17.53■□□□□ 0.4
LDLRP01130 AC011506.1-201ENST00000474329 610 ntBASIC17.53■□□□□ 0.4
LDLRP01130 YBX1P2-201ENST00000489612 999 ntBASIC17.53■□□□□ 0.4
LDLRP01130 KRT18P16-201ENST00000510337 1294 ntBASIC17.53■□□□□ 0.4
LDLRP01130 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.53■□□□□ 0.4
LDLRP01130 C1QL1P1-201ENST00000568105 661 ntBASIC17.53■□□□□ 0.4
LDLRP01130 AL138966.2-201ENST00000621997 464 ntBASIC17.53■□□□□ 0.4
LDLRP01130 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LDLRP01130 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
LDLRP01130 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDLRP01130 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LDLRP01130 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.52■□□□□ 0.4
LDLRP01130 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.52■□□□□ 0.4
LDLRP01130 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.52■□□□□ 0.4
LDLRP01130 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 AL499627.1-201ENST00000569373 2188 ntBASIC17.52■□□□□ 0.4
LDLRP01130 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
LDLRP01130 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.52■□□□□ 0.4
LDLRP01130 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.52■□□□□ 0.4
LDLRP01130 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.52■□□□□ 0.4
LDLRP01130 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 PCED1CP-201ENST00000419887 785 ntBASIC17.52■□□□□ 0.4
LDLRP01130 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.52■□□□□ 0.4
LDLRP01130 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.52■□□□□ 0.4
LDLRP01130 AC092647.4-201ENST00000457211 535 ntBASIC17.52■□□□□ 0.4
LDLRP01130 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.52■□□□□ 0.4
LDLRP01130 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.52■□□□□ 0.4
LDLRP01130 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDLRP01130 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LDLRP01130 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LDLRP01130 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
LDLRP01130 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.52■□□□□ 0.39
LDLRP01130 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LDLRP01130 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.52■□□□□ 0.39
LDLRP01130 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.51■□□□□ 0.39
LDLRP01130 AC138028.4-201ENST00000564984 1845 ntBASIC17.51■□□□□ 0.39
LDLRP01130 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LDLRP01130 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.51■□□□□ 0.39
LDLRP01130 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.51■□□□□ 0.39
LDLRP01130 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.51■□□□□ 0.39
LDLRP01130 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.51■□□□□ 0.39
LDLRP01130 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDLRP01130 TUBB8P6-201ENST00000436895 1288 ntBASIC17.51■□□□□ 0.39
LDLRP01130 FAM86EP-206ENST00000510506 987 ntBASIC17.51■□□□□ 0.39
LDLRP01130 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.51■□□□□ 0.39
LDLRP01130 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.51■□□□□ 0.39
LDLRP01130 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms