Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MBD4O95243 AC005336.2-201ENST00000593183 939 ntBASIC21.59■■□□□ 1.05
MBD4O95243 AC099336.1-202ENST00000602961 463 ntBASIC21.59■■□□□ 1.05
MBD4O95243 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.59■■□□□ 1.05
MBD4O95243 AC138894.3-201ENST00000603787 634 ntBASIC21.59■■□□□ 1.05
MBD4O95243 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MBD4O95243 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.59■■□□□ 1.05
MBD4O95243 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
MBD4O95243 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
MBD4O95243 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MBD4O95243 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MBD4O95243 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MBD4O95243 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MBD4O95243 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MBD4O95243 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MBD4O95243 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.58■■□□□ 1.05
MBD4O95243 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.58■■□□□ 1.05
MBD4O95243 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
MBD4O95243 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MBD4O95243 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MBD4O95243 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
MBD4O95243 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
MBD4O95243 AL450487.1-201ENST00000426799 995 ntBASIC21.58■■□□□ 1.05
MBD4O95243 NUS1P1-201ENST00000446295 882 ntBASIC21.58■■□□□ 1.05
MBD4O95243 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.58■■□□□ 1.05
MBD4O95243 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
MBD4O95243 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MBD4O95243 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.58■■□□□ 1.04
MBD4O95243 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MBD4O95243 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.58■■□□□ 1.04
MBD4O95243 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.58■■□□□ 1.04
MBD4O95243 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MBD4O95243 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.58■■□□□ 1.04
MBD4O95243 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MBD4O95243 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MBD4O95243 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MBD4O95243 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
MBD4O95243 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MBD4O95243 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.57■■□□□ 1.04
MBD4O95243 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
MBD4O95243 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
MBD4O95243 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.57■■□□□ 1.04
MBD4O95243 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.57■■□□□ 1.04
MBD4O95243 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.57■■□□□ 1.04
MBD4O95243 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 AC112698.1-201ENST00000510299 916 ntBASIC21.57■■□□□ 1.04
MBD4O95243 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.57■■□□□ 1.04
MBD4O95243 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.57■■□□□ 1.04
MBD4O95243 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.57■■□□□ 1.04
MBD4O95243 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.57■■□□□ 1.04
MBD4O95243 AL732292.2-201ENST00000609649 430 ntBASIC21.57■■□□□ 1.04
MBD4O95243 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MBD4O95243 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
MBD4O95243 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
MBD4O95243 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.56■■□□□ 1.04
MBD4O95243 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 REXO1L9P-201ENST00000604264 2108 ntBASIC21.56■■□□□ 1.04
MBD4O95243 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.56■■□□□ 1.04
MBD4O95243 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.56■■□□□ 1.04
MBD4O95243 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
MBD4O95243 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.56■■□□□ 1.04
MBD4O95243 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.56■■□□□ 1.04
MBD4O95243 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.56■■□□□ 1.04
MBD4O95243 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.56■■□□□ 1.04
MBD4O95243 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
MBD4O95243 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
MBD4O95243 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.56■■□□□ 1.04
MBD4O95243 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.56■■□□□ 1.04
MBD4O95243 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD4O95243 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.55■■□□□ 1.04
MBD4O95243 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD4O95243 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
MBD4O95243 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD4O95243 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms