Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.13■□□□□ 0.49
LDB2O43679 KRT18P35-201ENST00000510488 1269 ntBASIC18.13■□□□□ 0.49
LDB2O43679 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.13■□□□□ 0.49
LDB2O43679 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.13■□□□□ 0.49
LDB2O43679 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
LDB2O43679 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LDB2O43679 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.13■□□□□ 0.49
LDB2O43679 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDB2O43679 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB2O43679 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LDB2O43679 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LDB2O43679 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
LDB2O43679 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
LDB2O43679 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LDB2O43679 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.12■□□□□ 0.49
LDB2O43679 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.12■□□□□ 0.49
LDB2O43679 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LDB2O43679 SPDYE13P-201ENST00000445314 798 ntBASIC18.12■□□□□ 0.49
LDB2O43679 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.12■□□□□ 0.49
LDB2O43679 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB2O43679 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB2O43679 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.12■□□□□ 0.49
LDB2O43679 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.12■□□□□ 0.49
LDB2O43679 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.12■□□□□ 0.49
LDB2O43679 AL590326.2-201ENST00000625139 305 ntBASIC18.12■□□□□ 0.49
LDB2O43679 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
LDB2O43679 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
LDB2O43679 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
LDB2O43679 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDB2O43679 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 KRT18P48-201ENST00000434763 852 ntBASIC18.11■□□□□ 0.49
LDB2O43679 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.11■□□□□ 0.49
LDB2O43679 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB2O43679 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LDB2O43679 VENTXP5-201ENST00000523979 775 ntBASIC18.11■□□□□ 0.49
LDB2O43679 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
LDB2O43679 AC083849.1-201ENST00000615227 514 ntBASIC18.11■□□□□ 0.49
LDB2O43679 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.11■□□□□ 0.49
LDB2O43679 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB2O43679 KRT18P55-202ENST00000578578 1546 ntBASIC18.11■□□□□ 0.49
LDB2O43679 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.11■□□□□ 0.49
LDB2O43679 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LDB2O43679 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.11■□□□□ 0.49
LDB2O43679 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDB2O43679 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LDB2O43679 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.1■□□□□ 0.49
LDB2O43679 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDB2O43679 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms