Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CACNA1AO00555 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CACNA1AO00555 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.93■□□□□ 0.3
CACNA1AO00555 MIR658-201ENST00000385210 100 ntBASIC16.93■□□□□ 0.3
CACNA1AO00555 RNA5SP423-201ENST00000517127 109 ntBASIC16.93■□□□□ 0.3
CACNA1AO00555 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.93■□□□□ 0.3
CACNA1AO00555 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.93■□□□□ 0.3
CACNA1AO00555 AC099343.3-201ENST00000605834 2503 ntBASIC16.93■□□□□ 0.3
CACNA1AO00555 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 AC004890.2-204ENST00000481968 304 ntBASIC16.92■□□□□ 0.3
CACNA1AO00555 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 AC099522.2-201ENST00000607001 744 ntBASIC16.92■□□□□ 0.3
CACNA1AO00555 AC019129.2-201ENST00000609837 1235 ntBASIC16.92■□□□□ 0.3
CACNA1AO00555 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.92■□□□□ 0.3
CACNA1AO00555 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 AC068587.9-201ENST00000641814 219 ntBASIC16.92■□□□□ 0.3
CACNA1AO00555 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.92■□□□□ 0.3
CACNA1AO00555 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 AC112191.1-201ENST00000523689 701 ntBASIC16.92■□□□□ 0.3
CACNA1AO00555 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
CACNA1AO00555 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CACNA1AO00555 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.92■□□□□ 0.3
CACNA1AO00555 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.91■□□□□ 0.3
CACNA1AO00555 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.91■□□□□ 0.3
CACNA1AO00555 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.91■□□□□ 0.3
CACNA1AO00555 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CACNA1AO00555 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.91■□□□□ 0.3
CACNA1AO00555 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.91■□□□□ 0.3
CACNA1AO00555 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.91■□□□□ 0.3
CACNA1AO00555 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.91■□□□□ 0.3
CACNA1AO00555 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.91■□□□□ 0.3
CACNA1AO00555 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CACNA1AO00555 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 RPS15P9-201ENST00000494093 319 ntBASIC16.91■□□□□ 0.3
CACNA1AO00555 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.91■□□□□ 0.3
CACNA1AO00555 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.91■□□□□ 0.3
CACNA1AO00555 GPR182-203ENST00000622922 591 ntBASIC16.91■□□□□ 0.3
CACNA1AO00555 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CACNA1AO00555 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC16.91■□□□□ 0.3
CACNA1AO00555 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CACNA1AO00555 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CACNA1AO00555 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.9■□□□□ 0.3
CACNA1AO00555 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CACNA1AO00555 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CACNA1AO00555 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CACNA1AO00555 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CACNA1AO00555 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.9■□□□□ 0.3
CACNA1AO00555 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CACNA1AO00555 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CACNA1AO00555 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.9■□□□□ 0.3
CACNA1AO00555 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms