Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
PDLIM1O00151 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.29■□□□□ 0.36
PDLIM1O00151 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.29■□□□□ 0.36
PDLIM1O00151 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.29■□□□□ 0.36
PDLIM1O00151 AP006294.2-201ENST00000641667 209 ntBASIC17.29■□□□□ 0.36
PDLIM1O00151 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 AC008556.1-201ENST00000610908 2040 ntBASIC17.29■□□□□ 0.36
PDLIM1O00151 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
PDLIM1O00151 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
PDLIM1O00151 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.28■□□□□ 0.36
PDLIM1O00151 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PDLIM1O00151 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.28■□□□□ 0.36
PDLIM1O00151 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 RARRES2P10-201ENST00000564312 460 ntBASIC17.28■□□□□ 0.36
PDLIM1O00151 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.28■□□□□ 0.36
PDLIM1O00151 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.28■□□□□ 0.36
PDLIM1O00151 AC004264.1-201ENST00000608354 794 ntBASIC17.28■□□□□ 0.36
PDLIM1O00151 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.28■□□□□ 0.36
PDLIM1O00151 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.28■□□□□ 0.36
PDLIM1O00151 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
PDLIM1O00151 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.28■□□□□ 0.36
PDLIM1O00151 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.28■□□□□ 0.36
PDLIM1O00151 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.28■□□□□ 0.36
PDLIM1O00151 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PDLIM1O00151 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.27■□□□□ 0.36
PDLIM1O00151 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PDLIM1O00151 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
PDLIM1O00151 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PDLIM1O00151 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.27■□□□□ 0.36
PDLIM1O00151 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 AC008550.1-201ENST00000511500 884 ntBASIC17.27■□□□□ 0.36
PDLIM1O00151 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PDLIM1O00151 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.27■□□□□ 0.36
PDLIM1O00151 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.27■□□□□ 0.36
PDLIM1O00151 MYC-208ENST00000641036 567 ntBASIC17.27■□□□□ 0.36
PDLIM1O00151 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms