Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 LINC00896-202ENST00000609602 2128 ntBASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 SNORA78-201ENST00000459373 127 ntBASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 WWOX-216ENST00000569818 525 ntBASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 AC116562.4-202ENST00000641738 218 ntBASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 KRT8P7-201ENST00000533003 1432 ntBASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CPSF4LA6NMK7 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 AC007663.1-201ENST00000438948 1240 ntBASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 C2orf69P3-201ENST00000565542 1120 ntBASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.75■□□□□ 0.27
CPSF4LA6NMK7 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 LINC01126-201ENST00000623515 1646 ntBASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 AL355075.4-201ENST00000554988 638 ntBASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms