Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC116407.4-201ENST00000623319 1061 ntBASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4CQ96CF2 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 KRT8P50-201ENST00000562022 1438 ntBASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 AL391807.1-203ENST00000604392 2365 ntBASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 AC104390.1-201ENST00000555663 520 ntBASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 CBFB-203ENST00000561924 584 ntTSL 5 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP4CQ96CF2 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 AL645929.1-201ENST00000420084 975 ntBASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 AL136038.3-201ENST00000561909 1096 ntBASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 MIR3180-4-201ENST00000582223 153 ntBASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CHMP4CQ96CF2 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 GMCL1P1-201ENST00000463439 1581 ntBASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 SLC25A6P5-201ENST00000435663 894 ntBASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 AL136038.4-201ENST00000603606 1261 ntBASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CHMP4CQ96CF2 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
CHMP4CQ96CF2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.6■■□□□ 1.05
CHMP4CQ96CF2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CHMP4CQ96CF2 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms