Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 AL163051.1-201ENST00000569214 1512 ntBASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMC1BQ8NDV3 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 AC236430.1-201ENST00000402231 743 ntBASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 SIGLEC30P-201ENST00000455569 941 ntBASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 AC108073.2-201ENST00000464002 357 ntBASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 CD63-210ENST00000550776 870 ntTSL 5 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SMC1BQ8NDV3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 AC004461.1-201ENST00000412461 403 ntBASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 AC002472.2-201ENST00000442739 958 ntBASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 PRYP5-201ENST00000451909 266 ntBASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 AC020907.5-201ENST00000624372 1936 ntBASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 LINC00628-201ENST00000628516 1289 ntBASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMC1BQ8NDV3 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 Z98044.1-201ENST00000632503 1764 ntBASIC21.41■■□□□ 1.02
SMC1BQ8NDV3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.4■■□□□ 1.02
SMC1BQ8NDV3 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms