Protein–RNA interactions for Protein: Q8NC44

RETREG2, Reticulophagy regulator 2, humanhuman

Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2Q8NC44 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RETREG2Q8NC44 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 AL357033.4-201ENST00000617703 1807 ntBASIC20.55■□□□□ 0.88
RETREG2Q8NC44 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 AP003733.1-201ENST00000491725 852 ntBASIC20.55■□□□□ 0.88
RETREG2Q8NC44 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RETREG2Q8NC44 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.54■□□□□ 0.88
RETREG2Q8NC44 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 AC005332.3-201ENST00000589904 676 ntBASIC20.54■□□□□ 0.88
RETREG2Q8NC44 AC104692.2-201ENST00000603054 253 ntBASIC20.54■□□□□ 0.88
RETREG2Q8NC44 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RETREG2Q8NC44 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.54■□□□□ 0.88
RETREG2Q8NC44 LETM1P2-201ENST00000597330 2178 ntBASIC20.53■□□□□ 0.88
RETREG2Q8NC44 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RETREG2Q8NC44 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RETREG2Q8NC44 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RETREG2Q8NC44 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RETREG2Q8NC44 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.52■□□□□ 0.88
RETREG2Q8NC44 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RETREG2Q8NC44 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RETREG2Q8NC44 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RETREG2Q8NC44 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RETREG2Q8NC44 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms