Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
C9orf40Q8IXQ3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 NEFHP1-201ENST00000412845 2629 ntBASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 AC135050.7-201ENST00000624508 2218 ntBASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
C9orf40Q8IXQ3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 ABALON-201ENST00000629058 1903 ntBASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 AL845331.1-201ENST00000424978 1190 ntBASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 DRAXINP1-201ENST00000437611 948 ntBASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 HCG4P8-203ENST00000443049 980 ntBASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 AC068472.1-201ENST00000474589 881 ntBASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
C9orf40Q8IXQ3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 AL354751.1-201ENST00000412768 1863 ntBASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 AC092329.2-201ENST00000598402 547 ntBASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
C9orf40Q8IXQ3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms