Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FAM197Y8-203ENST00000450145 560 ntBASIC18.44■□□□□ 0.54
USP39Q53GS9 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
USP39Q53GS9 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.44■□□□□ 0.54
USP39Q53GS9 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
USP39Q53GS9 AF228730.7-201ENST00000641842 219 ntBASIC18.44■□□□□ 0.54
USP39Q53GS9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.44■□□□□ 0.54
USP39Q53GS9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.44■□□□□ 0.54
USP39Q53GS9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
USP39Q53GS9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP39Q53GS9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.43■□□□□ 0.54
USP39Q53GS9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.43■□□□□ 0.54
USP39Q53GS9 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.43■□□□□ 0.54
USP39Q53GS9 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
USP39Q53GS9 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.43■□□□□ 0.54
USP39Q53GS9 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.43■□□□□ 0.54
USP39Q53GS9 AP005901.3-202ENST00000581653 237 ntBASIC18.43■□□□□ 0.54
USP39Q53GS9 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.43■□□□□ 0.54
USP39Q53GS9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
USP39Q53GS9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.43■□□□□ 0.54
USP39Q53GS9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP39Q53GS9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.42■□□□□ 0.54
USP39Q53GS9 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.42■□□□□ 0.54
USP39Q53GS9 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.42■□□□□ 0.54
USP39Q53GS9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.42■□□□□ 0.54
USP39Q53GS9 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
USP39Q53GS9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
USP39Q53GS9 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.42■□□□□ 0.54
USP39Q53GS9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.42■□□□□ 0.54
USP39Q53GS9 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.42■□□□□ 0.54
USP39Q53GS9 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.42■□□□□ 0.54
USP39Q53GS9 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.42■□□□□ 0.54
USP39Q53GS9 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.42■□□□□ 0.54
USP39Q53GS9 AL591684.3-201ENST00000605187 298 ntBASIC18.42■□□□□ 0.54
USP39Q53GS9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 IL9RP2-201ENST00000423948 1312 ntBASIC18.42■□□□□ 0.54
USP39Q53GS9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.42■□□□□ 0.54
USP39Q53GS9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
USP39Q53GS9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
USP39Q53GS9 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.41■□□□□ 0.54
USP39Q53GS9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.41■□□□□ 0.54
USP39Q53GS9 FP475955.4-201ENST00000623131 1990 ntBASIC18.41■□□□□ 0.54
USP39Q53GS9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.41■□□□□ 0.54
USP39Q53GS9 KRT18P13-201ENST00000400056 1290 ntBASIC18.41■□□□□ 0.54
USP39Q53GS9 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.41■□□□□ 0.54
USP39Q53GS9 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 AF186996.4-201ENST00000467186 377 ntBASIC18.41■□□□□ 0.54
USP39Q53GS9 AC093909.1-201ENST00000504731 1122 ntBASIC18.41■□□□□ 0.54
USP39Q53GS9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.41■□□□□ 0.54
USP39Q53GS9 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
USP39Q53GS9 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.41■□□□□ 0.54
USP39Q53GS9 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
USP39Q53GS9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
USP39Q53GS9 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.41■□□□□ 0.54
USP39Q53GS9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
USP39Q53GS9 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP39Q53GS9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms