Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.51■□□□□ 0.39
HMGCS1Q01581 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 AC009947.2-201ENST00000444014 672 ntBASIC17.51■□□□□ 0.39
HMGCS1Q01581 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 NAPSB-206ENST00000562112 1266 ntBASIC17.51■□□□□ 0.39
HMGCS1Q01581 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.51■□□□□ 0.39
HMGCS1Q01581 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGCS1Q01581 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGCS1Q01581 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 MMP23A-201ENST00000234610 1017 ntBASIC17.5■□□□□ 0.39
HMGCS1Q01581 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 ECEL1P2-202ENST00000465689 757 ntBASIC17.5■□□□□ 0.39
HMGCS1Q01581 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 AC128688.1-201ENST00000487626 519 ntBASIC17.5■□□□□ 0.39
HMGCS1Q01581 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 AC009065.1-201ENST00000564055 1225 ntBASIC17.5■□□□□ 0.39
HMGCS1Q01581 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 AC024243.1-201ENST00000609234 778 ntBASIC17.5■□□□□ 0.39
HMGCS1Q01581 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGCS1Q01581 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGCS1Q01581 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS1Q01581 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HMGCS1Q01581 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms