Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.59■□□□□ 0.09
ABCA4P78363 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.59■□□□□ 0.09
ABCA4P78363 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 TP73-AS1-210ENST00000637775 1455 ntBASIC15.59■□□□□ 0.09
ABCA4P78363 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.59■□□□□ 0.09
ABCA4P78363 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.59■□□□□ 0.09
ABCA4P78363 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.59■□□□□ 0.09
ABCA4P78363 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.59■□□□□ 0.09
ABCA4P78363 MTDHP3-201ENST00000594186 672 ntBASIC15.59■□□□□ 0.09
ABCA4P78363 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
ABCA4P78363 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.58■□□□□ 0.09
ABCA4P78363 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
ABCA4P78363 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.58■□□□□ 0.08
ABCA4P78363 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.58■□□□□ 0.08
ABCA4P78363 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.58■□□□□ 0.08
ABCA4P78363 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.58■□□□□ 0.08
ABCA4P78363 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.58■□□□□ 0.08
ABCA4P78363 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.58■□□□□ 0.08
ABCA4P78363 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.58■□□□□ 0.08
ABCA4P78363 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC15.58■□□□□ 0.08
ABCA4P78363 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.58■□□□□ 0.08
ABCA4P78363 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.58■□□□□ 0.08
ABCA4P78363 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC15.58■□□□□ 0.08
ABCA4P78363 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
ABCA4P78363 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
ABCA4P78363 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.57■□□□□ 0.08
ABCA4P78363 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
ABCA4P78363 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 RPS8P6-201ENST00000426177 609 ntBASIC15.57■□□□□ 0.08
ABCA4P78363 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.57■□□□□ 0.08
ABCA4P78363 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 AL691403.2-201ENST00000618460 490 ntBASIC15.57■□□□□ 0.08
ABCA4P78363 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.57■□□□□ 0.08
ABCA4P78363 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 AC005332.7-201ENST00000614046 2005 ntBASIC15.57■□□□□ 0.08
ABCA4P78363 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
ABCA4P78363 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC15.57■□□□□ 0.08
ABCA4P78363 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
ABCA4P78363 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC15.57■□□□□ 0.08
ABCA4P78363 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.57■□□□□ 0.08
ABCA4P78363 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.57■□□□□ 0.08
ABCA4P78363 ABCD1P5-201ENST00000445663 754 ntBASIC15.57■□□□□ 0.08
ABCA4P78363 RNA5SP415-201ENST00000517246 115 ntBASIC15.57■□□□□ 0.08
ABCA4P78363 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.57■□□□□ 0.08
ABCA4P78363 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.57■□□□□ 0.08
ABCA4P78363 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
ABCA4P78363 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC15.57■□□□□ 0.08
ABCA4P78363 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ABCA4P78363 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.57■□□□□ 0.08
ABCA4P78363 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
ABCA4P78363 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms