Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.65□□□□□ -0.22
FOXA3P55318 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
FOXA3P55318 LINC00602-201ENST00000629776 2065 ntBASIC13.65□□□□□ -0.22
FOXA3P55318 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 KRT8P41-201ENST00000533985 1514 ntBASIC13.65□□□□□ -0.22
FOXA3P55318 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
FOXA3P55318 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
FOXA3P55318 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 PCDH8P1-201ENST00000428983 2773 ntBASIC13.65□□□□□ -0.22
FOXA3P55318 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 AC034268.1-201ENST00000441047 882 ntBASIC13.65□□□□□ -0.22
FOXA3P55318 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 LGR4-203ENST00000480977 492 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 GLRB-205ENST00000512619 728 ntTSL 3 BASIC13.65□□□□□ -0.22
FOXA3P55318 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC13.65□□□□□ -0.22
FOXA3P55318 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
FOXA3P55318 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA3P55318 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA3P55318 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA3P55318 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
FOXA3P55318 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA3P55318 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.65□□□□□ -0.23
FOXA3P55318 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA3P55318 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
FOXA3P55318 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA3P55318 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA3P55318 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA3P55318 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC13.64□□□□□ -0.23
FOXA3P55318 AC133552.2-202ENST00000575694 574 ntBASIC13.64□□□□□ -0.23
FOXA3P55318 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA3P55318 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA3P55318 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
FOXA3P55318 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA3P55318 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA3P55318 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
FOXA3P55318 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 KRT18P55-202ENST00000578578 1546 ntBASIC13.64□□□□□ -0.23
FOXA3P55318 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA3P55318 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms