Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 KRT8P3-201ENST00000519669 1449 ntBASIC19.43■□□□□ 0.7
VCPP55072 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.43■□□□□ 0.7
VCPP55072 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.43■□□□□ 0.7
VCPP55072 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VCPP55072 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.43■□□□□ 0.7
VCPP55072 FAM220CP-201ENST00000395253 831 ntBASIC19.43■□□□□ 0.7
VCPP55072 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.43■□□□□ 0.7
VCPP55072 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.43■□□□□ 0.7
VCPP55072 KRT16P4-201ENST00000453883 522 ntBASIC19.43■□□□□ 0.7
VCPP55072 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.43■□□□□ 0.7
VCPP55072 LINC02084-201ENST00000606069 1096 ntBASIC19.43■□□□□ 0.7
VCPP55072 AC068587.9-201ENST00000641814 219 ntBASIC19.43■□□□□ 0.7
VCPP55072 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.43■□□□□ 0.7
VCPP55072 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.43■□□□□ 0.7
VCPP55072 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VCPP55072 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.42■□□□□ 0.7
VCPP55072 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.42■□□□□ 0.7
VCPP55072 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.42■□□□□ 0.7
VCPP55072 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VCPP55072 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.42■□□□□ 0.7
VCPP55072 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.42■□□□□ 0.7
VCPP55072 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.42■□□□□ 0.7
VCPP55072 MCCD1P1-208ENST00000445732 328 ntBASIC19.42■□□□□ 0.7
VCPP55072 AC034232.1-201ENST00000506026 1064 ntBASIC19.42■□□□□ 0.7
VCPP55072 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.42■□□□□ 0.7
VCPP55072 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.42■□□□□ 0.7
VCPP55072 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.42■□□□□ 0.7
VCPP55072 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VCPP55072 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.42■□□□□ 0.7
VCPP55072 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VCPP55072 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VCPP55072 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VCPP55072 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
VCPP55072 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.41■□□□□ 0.7
VCPP55072 KRT8P32-201ENST00000512863 1461 ntBASIC19.41■□□□□ 0.7
VCPP55072 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.41■□□□□ 0.7
VCPP55072 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VCPP55072 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 HCG11-201ENST00000411553 5696 ntBASIC19.41■□□□□ 0.7
VCPP55072 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VCPP55072 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.41■□□□□ 0.7
VCPP55072 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.41■□□□□ 0.7
VCPP55072 HMGN1P19-201ENST00000436976 333 ntBASIC19.41■□□□□ 0.7
VCPP55072 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.41■□□□□ 0.7
VCPP55072 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.41■□□□□ 0.7
VCPP55072 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VCPP55072 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.41■□□□□ 0.7
VCPP55072 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VCPP55072 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.41■□□□□ 0.7
VCPP55072 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VCPP55072 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VCPP55072 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
VCPP55072 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VCPP55072 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms