Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
SMARCA1P28370 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.79■□□□□ 0.92
SMARCA1P28370 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.79■□□□□ 0.92
SMARCA1P28370 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.79■□□□□ 0.92
SMARCA1P28370 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.79■□□□□ 0.92
SMARCA1P28370 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.79■□□□□ 0.92
SMARCA1P28370 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMARCA1P28370 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SMARCA1P28370 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 REXO1L9P-201ENST00000604264 2108 ntBASIC20.78■□□□□ 0.92
SMARCA1P28370 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.78■□□□□ 0.92
SMARCA1P28370 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
SMARCA1P28370 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.78■□□□□ 0.92
SMARCA1P28370 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.78■□□□□ 0.92
SMARCA1P28370 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMARCA1P28370 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SMARCA1P28370 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 NUS1P1-201ENST00000446295 882 ntBASIC20.78■□□□□ 0.92
SMARCA1P28370 LINC00265-3P-201ENST00000447588 903 ntBASIC20.78■□□□□ 0.92
SMARCA1P28370 KRT17P6-201ENST00000453795 1220 ntBASIC20.78■□□□□ 0.92
SMARCA1P28370 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
SMARCA1P28370 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.78■□□□□ 0.92
SMARCA1P28370 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.78■□□□□ 0.92
SMARCA1P28370 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.78■□□□□ 0.92
SMARCA1P28370 AP005901.3-202ENST00000581653 237 ntBASIC20.78■□□□□ 0.92
SMARCA1P28370 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.78■□□□□ 0.92
SMARCA1P28370 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SMARCA1P28370 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.78■□□□□ 0.92
SMARCA1P28370 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SMARCA1P28370 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.78■□□□□ 0.92
SMARCA1P28370 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.78■□□□□ 0.92
SMARCA1P28370 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMARCA1P28370 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMARCA1P28370 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SMARCA1P28370 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SMARCA1P28370 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SMARCA1P28370 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 AC091607.1-201ENST00000490318 1060 ntBASIC20.77■□□□□ 0.92
SMARCA1P28370 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.77■□□□□ 0.92
SMARCA1P28370 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.77■□□□□ 0.92
SMARCA1P28370 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.77■□□□□ 0.92
SMARCA1P28370 AL138831.2-201ENST00000606564 490 ntBASIC20.77■□□□□ 0.92
SMARCA1P28370 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.77■□□□□ 0.92
SMARCA1P28370 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SMARCA1P28370 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMARCA1P28370 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
SMARCA1P28370 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMARCA1P28370 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMARCA1P28370 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.76■□□□□ 0.91
SMARCA1P28370 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.76■□□□□ 0.91
SMARCA1P28370 AC138028.4-201ENST00000564984 1845 ntBASIC20.76■□□□□ 0.91
SMARCA1P28370 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.76■□□□□ 0.91
SMARCA1P28370 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SMARCA1P28370 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms