Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
MSH3P20585 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 ABALON-201ENST00000629058 1903 ntBASIC18.09■□□□□ 0.49
MSH3P20585 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSH3P20585 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.09■□□□□ 0.49
MSH3P20585 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.08■□□□□ 0.49
MSH3P20585 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
MSH3P20585 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSH3P20585 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSH3P20585 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
MSH3P20585 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.08■□□□□ 0.49
MSH3P20585 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.49
MSH3P20585 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSH3P20585 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.08■□□□□ 0.49
MSH3P20585 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
MSH3P20585 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
MSH3P20585 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.08■□□□□ 0.49
MSH3P20585 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
MSH3P20585 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSH3P20585 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.08■□□□□ 0.49
MSH3P20585 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH3P20585 KRT18P35-201ENST00000510488 1269 ntBASIC18.08■□□□□ 0.48
MSH3P20585 ZNF444P1-201ENST00000559497 298 ntBASIC18.08■□□□□ 0.48
MSH3P20585 AC024563.2-201ENST00000603282 481 ntBASIC18.08■□□□□ 0.48
MSH3P20585 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.08■□□□□ 0.48
MSH3P20585 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH3P20585 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
MSH3P20585 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
MSH3P20585 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH3P20585 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH3P20585 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH3P20585 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.08■□□□□ 0.48
MSH3P20585 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.08■□□□□ 0.48
MSH3P20585 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH3P20585 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSH3P20585 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH3P20585 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.07■□□□□ 0.48
MSH3P20585 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
MSH3P20585 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.07■□□□□ 0.48
MSH3P20585 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.07■□□□□ 0.48
MSH3P20585 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 ESPNP-201ENST00000270691 2015 ntBASIC18.07■□□□□ 0.48
MSH3P20585 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 ARMC10P1-201ENST00000313754 855 ntBASIC18.07■□□□□ 0.48
MSH3P20585 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH3P20585 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.07■□□□□ 0.48
MSH3P20585 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.07■□□□□ 0.48
MSH3P20585 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.07■□□□□ 0.48
MSH3P20585 AC083849.1-201ENST00000615227 514 ntBASIC18.07■□□□□ 0.48
MSH3P20585 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
MSH3P20585 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH3P20585 NOC2LP1-202ENST00000452600 2235 ntBASIC18.07■□□□□ 0.48
MSH3P20585 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH3P20585 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.07■□□□□ 0.48
MSH3P20585 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
MSH3P20585 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSH3P20585 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 AL024508.2-201ENST00000607749 1894 ntBASIC18.06■□□□□ 0.48
MSH3P20585 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.06■□□□□ 0.48
MSH3P20585 AL031133.1-201ENST00000406807 723 ntBASIC18.06■□□□□ 0.48
MSH3P20585 KRT18P48-201ENST00000434763 852 ntBASIC18.06■□□□□ 0.48
MSH3P20585 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSH3P20585 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.06■□□□□ 0.48
MSH3P20585 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.06■□□□□ 0.48
MSH3P20585 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.06■□□□□ 0.48
MSH3P20585 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.06■□□□□ 0.48
MSH3P20585 AL445228.2-201ENST00000605589 952 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms